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ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology J Waese, J Fan, A Pasha, H Yu, G Fucile, R Shi, M Cumming, LA Kelley, ... The Plant Cell 29 (8), 1806-1821, 2017 | 366 | 2017 |
Inference of longevity-related genes from a robust coexpression network of seed maturation identifies regulators linking seed storability to biotic defense-related pathways K Righetti, JL Vu, S Pelletier, BL Vu, E Glaab, D Lalanne, A Pasha, ... The plant cell 27 (10), 2692-2708, 2015 | 188 | 2015 |
NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis D Yan, V Easwaran, V Chau, M Okamoto, M Ierullo, M Kimura, A Endo, ... Nature communications 7 (1), 13179, 2016 | 170 | 2016 |
An Updated Gene Atlas for Maize Reveals Organ‐Specific and Stress‐Induced Genes GM Hoopes, JP Hamilton, JC Wood, E Esteban, A Pasha, B Vaillancourt, ... The Plant Journal, 2018 | 130 | 2018 |
High Temporal-Resolution Transcriptome Landscape of Early Maize Seed Development F Yi, W Gu, J Chen, N Song, X Gao, X Zhang, Y Zhou, X Ma, W Song, ... The Plant Cell 31 (5), 974-992, 2019 | 126 | 2019 |
Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon R Sibout, S Proost, BO Hansen, N Vaid, FM Giorgi, S Ho‐Yue‐Kuang, ... New Phytologist 215 (3), 1009-1025, 2017 | 87 | 2017 |
The developmental transcriptome atlas of the biofuel crop Camelina sativa S Kagale, J Nixon, Y Khedikar, A Pasha, NJ Provart, WE Clarke, V Bollina, ... The Plant Journal 88 (5), 879-894, 2016 | 80 | 2016 |
Innovation, conservation, and repurposing of gene function in root cell type development K Kajala, M Gouran, L Shaar-Moshe, GA Mason, J Rodriguez-Medina, ... Cell 184 (12), 3333-3348. e19, 2021 | 73 | 2021 |
Regulation of cell type-specific immunity networks in Arabidopsis roots C Rich-Griffin, R Eichmann, MU Reitz, S Hermann, K Woolley-Allen, ... Plant Cell 32 (9), 2742-2762, 2020 | 70 | 2020 |
Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Subdomain Adjacent to the Embryo Scutellum NM Doll, J Just, V Brunaud, J Caďus, A Grimault, N Depčge-Fargeix, ... The Plant Cell 32 (4), 833-852, 2020 | 69 | 2020 |
The Transcriptional Landscape of Polyploid Wheats and their Diploid Ancestors during Embryogenesis and Grain Development D Xiang, TD Quilichini, Z Liu, P Gao, Y Pan, Q Li, KT Nilsen, P Venglat, ... The Plant Cell 31 (12), 2888-2911, 2019 | 66 | 2019 |
New BAR tools for mining expression data and exploring Cis‐elements in Arabidopsis thaliana RS Austin, S Hiu, J Waese, M Ierullo, A Pasha, TT Wang, J Fan, C Foong, ... The Plant Journal 88 (3), 490-504, 2016 | 64 | 2016 |
Tung Tree (Vernicia Fordii) Genome Provides A Resource for Understanding Genome Evolution and Improved Oil Production L Zhang, M Liu, H Long, W Dong, A Pasha, E Esteban, W Li, X Yang, Z Li, ... Genomics, Proteomics and Bioinformatics 17 (6), 558-575, 2019 | 57 | 2019 |
Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula V Herrbach, X Chirinos, D Rengel, K Agbevenou, R Vincent, S Pateyron, ... Journal of experimental botany 68 (3), 569-583, 2017 | 57 | 2017 |
An ‘eFP‐Seq Browser’for visualizing and exploring RNA sequencing data A Sullivan, PK Purohit, NH Freese, A Pasha, E Esteban, J Waese, A Wu, ... The Plant Journal 100 (3), 641-654, 2019 | 47 | 2019 |
Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism, and roots C Ferrari, D Shivhare, BO Hansen, A Pasha, E Esteban, NJ Provart, ... The Plant Cell 32 (4), 853-870, 2020 | 46 | 2020 |
Transcriptional landscapes of floral meristems in barley J Thiel, R Koppolu, C Trautewig, C Hertig, SM Kale, S Erbe, M Mascher, ... Science Advances 7 (18), eabf0832, 2021 | 43 | 2021 |
Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics TW Kim, CH Park, CC Hsu, YW Kim, YW Ko, Z Zhang, JY Zhu, YC Hsiao, ... The Plant Cell 35 (3), 975-993, 2023 | 42 | 2023 |
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