Cenk Sahinalp
Cenk Sahinalp
Professor of Computer Science, Indiana University, Bloomington
Verified email at indiana.edu
TitleCited byYear
A map of human genome variation from population-scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
63712010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ...
Bioinformatics 26 (13), 1608-1615, 2010
12232010
Personalized copy number and segmental duplication maps using next-generation sequencing
C Alkan, JM Kidd, T Marques-Bonet, G Aksay, F Antonacci, F Hormozdiari, ...
Nature genetics 41 (10), 1061, 2009
7232009
Demographic history and rare allele sharing among human populations
S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ...
Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011
4222011
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data
A McPherson, F Hormozdiari, A Zayed, R Giuliany, G Ha, MGF Sun, ...
PLoS computational biology 7 (5), e1001138, 2011
3932011
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp
Genome research 19 (7), 1270-1278, 2009
3412009
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ...
Genome research 18 (4), 571-584, 2008
2852008
mrsFAST: a cache-oblivious algorithm for short-read mapping
F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ...
Nature methods 7 (8), 576, 2010
2662010
Spatial genomic heterogeneity within localized, multifocal prostate cancer
PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ...
Nature genetics 47 (7), 736, 2015
2312015
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ...
Bioinformatics 26 (12), i350-i357, 2010
2252010
The structure and evolution of centromeric transition regions within the human genome
X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ, R Clark, T Graves, ...
Nature 430 (7002), 857, 2004
1782004
Genomic hallmarks of localized, non-indolent prostate cancer
M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler, J Livingstone, ...
Nature 541 (7637), 359, 2017
1532017
Communication complexity of document exchange
G Cormode, M Paterson, SC Sahinalp, U Vishkin
Proc. of the 11th ACM-SIAM Annual Symposium on Discrete Algorithms, 197-206, 2000
1522000
Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome
G Liu, S Zhao, JA Bailey, SC Sahinalp, C Alkan, E Tuzun, ED Green, ...
Genome research 13 (3), 358-368, 2003
1492003
Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set
I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ...
Journal of chemical information and modeling 50 (12), 2094-2111, 2010
1482010
Efficient approximate and dynamic matching of patterns using a labeling paradigm
SC Sahinalp, U Vishkin
Proceedings of 37th Conference on Foundations of Computer Science, 320-328, 1996
1441996
RNA–RNA interaction prediction and antisense RNA target search
C Alkan, E Karakoc, JH Nadeau, SC Sahinalp, K Zhang
Journal of Computational Biology 13 (2), 267-282, 2006
1432006
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer
AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ...
The Journal of pathology 227 (3), 286-297, 2012
1212012
Approximate nearest neighbors and sequence comparison with block operations
S Muthukrishnan, SC Sahinalp
STOC, 416-424, 2000
1172000
Biomolecular network motif counting and discovery by color coding
N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp
Bioinformatics 24 (13), i241-i249, 2008
1132008
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