Shiyong Liu
Cited by
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Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
Nonnatural protein–protein interaction-pair design by key residues grafting
S Liu, S Liu, X Zhu, H Liang, A Cao, Z Chang, L Lai
Proceedings of the National Academy of Sciences 104 (13), 5330, 2007
CPPred: coding potential prediction based on the global description of RNA sequence
X Tong, S Liu
Nucleic acids research 47 (8), e43-e43, 2019
RBPPred: predicting RNA-binding proteins from sequence using SVM
X Zhang, S Liu
Bioinformatics 33 (6), 854-862, 2017
Virtual screening of novel noncovalent inhibitors for SARS-CoV 3C-like proteinase
Z Liu, C Huang, K Fan, P Wei, H Chen, S Liu, J Pei, L Shi, B Li, K Yang, ...
Journal of chemical information and modeling 45 (1), 10-17, 2005
Dockground protein–protein docking decoy set
S Liu, Y Gao, IA Vakser
Bioinformatics 24 (22), 2634-2635, 2008
A novel protocol for three-dimensional structure prediction of RNA-protein complexes
Y Huang, S Liu, D Guo, L Li, Y Xiao
Scientific Reports, 2013
DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking
S Liu, IA Vakser
BMC bioinformatics 12 (1), 1-7, 2011
Deep-RBPPred: Predicting RNA binding proteins in the proteome scale based on deep learning
J Zheng, X Zhang, X Zhao, X Tong, X Hong, J Xie, S Liu
Scientific reports 8 (1), 15264, 2018
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
L Li, D Guo, Y Huang, S Liu, Y Xiao
BMC bioinformatics 12 (1), 1-9, 2011
A novel antiviral lncRNA, EDAL, shields a T309 O-GlcNAcylation site to promote EZH2 lysosomal degradation
B Sui, D Chen, W Liu, Q Wu, B Tian, Y Li, J Hou, S Liu, J Xie, H Jiang, ...
Genome biology 21, 1-36, 2020
Quaternary structure, substrate selectivity and inhibitor design for SARS 3C-like proteinase
L Lai, X Han, H Chen, P Wei, C Huang, S Liu, K Fan, L Zhou, Z Liu, J Pei, ...
Current pharmaceutical design 12 (35), 4555-4564, 2006
Template-based modeling of protein-RNA interactions
J Zheng, PJ Kundrotas, IA Vakser, S Liu
PLoS computational biology 12 (9), e1005120, 2016
The dataset for protein–RNA binding affinity
X Yang, H Li, Y Huang, S Liu
Protein Science 22 (12), 1808-1811, 2013
A combinatorial score to distinguish biological and nonbiological protein–protein interfaces
S Liu, Q Li, L Lai
Proteins: Structure, Function, and Bioinformatics 64 (1), 68-78, 2006
Novel EDA p.Ile260Ser Mutation Linked to Non-syndromic Hypodontia
Y Yang, L Luo, J Xu, P Zhu, W Xue, J Wang, W Li, M Wang, K Cheng, ...
Journal of dental research 92 (6), 500-506, 2013
Small GTPases SAR1A and SAR1B regulate the trafficking of the cardiac sodium channel Nav1. 5
Z Wang, G Yu, Y Liu, S Liu, M Aridor, Y Huang, Y Hu, L Wang, S Li, ...
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1864 (11 …, 2018
Break CDK2/Cyclin E1 interface allosterically with small peptides
H Chen, Y Zhao, H Li, D Zhang, Y Huang, Q Shen, R Van Duyne, ...
PLoS One 9 (10), e109154, 2014
P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking
J Zheng, X Hong, J Xie, X Tong, S Liu
Bioinformatics 36 (1), 96-103, 2020
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