Charles G. Danko
Charles G. Danko
Robert N. Noyce Assistant Professor, Cornell University
Verified email at cornell.edu - Homepage
Title
Cited by
Cited by
Year
Bayesian inference of ancient human demography from individual genome sequences
I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel
Nature genetics 43 (10), 1031, 2011
4702011
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
4612010
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus
Cell 145 (4), 622-634, 2011
4332011
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis
Nature genetics 46 (12), 1311, 2014
4132014
Enhancer transcripts mark active estrogen receptor binding sites
N Hah, S Murakami, A Nagari, CG Danko, WL Kraus
Genome research 23 (8), 1210-1223, 2013
3702013
Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells
CG Danko, N Hah, X Luo, AL Martins, L Core, JT Lis, A Siepel, WL Kraus
Molecular cell 50 (2), 212-222, 2013
2742013
Mammalian heat shock response and mechanisms underlying its genome-wide transcriptional regulation
DB Mahat, HH Salamanca, FM Duarte, CG Danko, JT Lis
Molecular cell 62 (1), 63-78, 2016
1892016
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
DB Mahat, H Kwak, GT Booth, IH Jonkers, CG Danko, RK Patel, ...
Nature protocols 11 (8), 1455, 2016
1602016
A unified architecture of transcriptional regulatory elements
R Andersson, A Sandelin, CG Danko
Trends in Genetics 31 (8), 426-433, 2015
1342015
Identification of active transcriptional regulatory elements from GRO-seq data
CG Danko, SL Hyland, LJ Core, AL Martins, CT Waters, HW Lee, ...
Nature methods 12 (5), 433-438, 2015
1232015
GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters
NJ Fuda, MJ Guertin, S Sharma, CG Danko, AL Martins, A Siepel, JT Lis
PLoS Genet 11 (3), e1005108, 2015
622015
Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans
L Zeng, SC Choi, CG Danko, A Siepel, MJ Stanhope, RA Burne
PloS one 8 (3), e60465, 2013
622013
Transcriptional response to stress is pre-wired by promoter and enhancer architecture
A Vihervaara, DB Mahat, MJ Guertin, T Chu, CG Danko, JT Lis, L Sistonen
Nature communications 8 (1), 1-16, 2017
572017
Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme
T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ...
Nature genetics 50 (11), 1553-1564, 2018
43*2018
groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
M Chae, CG Danko, WL Kraus
BMC bioinformatics 16 (1), 1-16, 2015
402015
Ultrastructural changes in cardiac myocytes from Boxer dogs with arrhythmogenic right ventricular cardiomyopathy
EM Oxford, CG Danko, BG Kornreich, K Maass, SA Hemsley, ...
Journal of Veterinary Cardiology 13 (2), 101-113, 2011
382011
Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses
X Luo, M Chae, R Krishnakumar, CG Danko, WL Kraus
BMC genomics 15 (1), 1-22, 2014
372014
Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells
M Saikia, P Burnham, SH Keshavjee, MFZ Wang, M Heyang, ...
Nature methods 16 (1), 59-62, 2019
342019
Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry
JJ Lewis, RC Geltman, PC Pollak, KE Rondem, SM Van Belleghem, ...
Proceedings of the National Academy of Sciences 116 (48), 24174-24183, 2019
322019
Dynamic evolution of regulatory element ensembles in primate CD4+ T cells
CG Danko, LA Choate, BA Marks, EJ Rice, Z Wang, T Chu, AL Martins, ...
Nature ecology & evolution 2 (3), 537-548, 2018
292018
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Articles 1–20