Stian Soiland-Reyes

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Carole GobleProfessor of Computer Science, University of ManchesterVerified email at cs.man.ac.uk
Khalid BelhajjamePSL, Université Paris-Dauphine, LAMSADEVerified email at dauphine.fr
Daniel GarijoOntology Engineering Group, UPM and Information Sciences Institute, USCVerified email at upm.es
Michael R. CrusoeCommon Workflow Language projectVerified email at commonwl.org
Timothy LeboRensselaer Polytechnic InstituteVerified email at rpi.edu
Paolo MissierProfessor in Large Scale Information Systems, Computing Science, Newcastle University, UKVerified email at acm.org
James CheneyReader, Laboratory for Foundations of Computer Science, University of EdinburghVerified email at inf.ed.ac.uk
Katy WolstencroftAssistant Professor, Bioinformatics, Leiden University, LIACS, NetherlandsVerified email at liacs.leidenuniv.nl
jun zhaoOxford UniversityVerified email at cs.ox.ac.uk
Hervé MénagerInstitut PasteurVerified email at pasteur.fr
Alan R WilliamsTechnical Manager, School of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Robert HainesHead of Research IT; Honorary Lecturer (Department of Computer Science), University of ManchesterVerified email at manchester.ac.uk
Sean BechhoferReader, School of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Oscar CorchoOntology Engineering Group, Departamento de Inteligencia Artificial, UPMVerified email at fi.upm.es
Timothy W. ClarkAssociate Professor of Public Health Sciences and Data Science, University of VirginiaVerified email at virginia.edu
David De RoureProfessor of e-Research, University of OxfordVerified email at oerc.ox.ac.uk
Donal FellowsSenior Software Engineer, University of ManchesterVerified email at manchester.ac.uk
Shoaib SufiThe University of ManchesterVerified email at manchester.ac.uk
Jiten BhagatVerified email at jits.co.uk
Kevin PageUniversity of OxfordVerified email at oerc.ox.ac.uk

Stian Soiland-Reyes

Technical Architect, School of Computer Science, University of Manchester

Verified email at manchester.ac.uk - Homepage

Reproducibility Workflows Open Science Web Standards Linked Data


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The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud K Wolstencroft, R Haines, D Fellows, A Williams, D Withers, S Owen, ... Nucleic acids research 41 (W1), W557-W561, 2013	849	2013
PROV-O: The PROV Ontology T Lebo, S Sahoo, D McGuinness, K Belhajjame, J Cheney, D Corsar, ... W3C Recommendation, 2013	665*	2013
Taverna, reloaded P Missier, S Soiland-Reyes, S Owen, W Tan, A Nenadic, I Dunlop, ... International conference on scientific and statistical database management …, 2010	240	2010
Common workflow language, v1.0 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Figshare, 2016	187*	2016
Workflow-Centric Research Objects: A First Class Citizen in the Scholarly Discourse. K Belhajjame, O Corcho, D Garijo, J Zhao, P Missier, DR Newman, ... SePublica@ ESWC, 1-12, 2012	157	2012
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014	98	2014
Open Annotation data model R Sanderson, P Ciccarese, H Van de Sompel, S Bradshaw, D Brickley, ... W3C Community draft, 2013	91	2013
PAV ontology: provenance, authoring and versioning P Ciccarese, S Soiland-Reyes, K Belhajjame, AJG Gray, C Goble, T Clark Journal of Biomedical Semantics 4 (37), 2013	89	2013
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017	84	2017
PROV model primer Y Gil, S Miles, K Belhajjame, H Deus, D Garijo, G Klyne, P Missier, ... W3C Working Group Note, 2013	82	2013
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ... Nucleic acids research 45 (D1), D404-D407, 2017	65	2017
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data P Li, JI Castrillo, G Velarde, I Wassink, S Soiland-Reyes, S Owen, ... BMC bioinformatics 9 (1), 1-11, 2008	59	2008
Designing the W3C open annotation data model R Sanderson, P Ciccarese, H Van De Sompel Association for Computing Machinery, 2013	48	2013
PROV model primer K Belhajjame, H Deus, D Garijo, G Klyne, P Missier, S Soiland-Reyes, ... URL: http://www.w3.org/TR/prov-primer, 2012	47*	2012
CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid W Tan, R Madduri, A Nenadic, S Soiland-Reyes, D Sulakhe, I Foster, ... BMC bioinformatics 11 (1), 1-12, 2010	43	2010
PROV-N: The provenance notation L Moreau, P Missier, J Cheney, S Soiland-Reyes World Wide Web Consortium, 2013	42	2013
Automated manipulation of systems biology models using libSBML within Taverna workflows P Li, T Oinn, S Soiland, DB Kell Bioinformatics 24 (2), 287-289, 2008	41	2008
FAIR computational workflows C Goble, S Cohen-Boulakia, S Soiland-Reyes, D Garijo, Y Gil, MR Crusoe, ... Data Intelligence 2 (1-2), 108-121, 2020	40	2020
Community-driven development for computational biology at Sprints, Hackathons and Codefests S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ... BMC bioinformatics 15 (14), 1-7, 2014	40	2014
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie, C Goble, MR Crusoe GigaScience 8 (11), giz095, 2019	35*	2019

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