Jeff Thompson
Jeff Thompson
OpenEye Scientific Software
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APOGEE: Global optimization of standard, generalized, and extended pooling problems via linear and logarithmic partitioning schemes
R Misener, JP Thompson, CA Floudas
Computers & Chemical Engineering 35 (5), 876-892, 2011
Forcefield_PTM: Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications
GA Khoury, JP Thompson, J Smadbeck, CA Kieslich, CA Floudas
Journal of chemical theory and computation 9 (12), 5653-5674, 2013
CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization
Y Wei, J Thompson, CA Floudas
Proceedings of the Royal Society A: Mathematical, Physical and Engineering …, 2012
System-size effects in ionic fluids under periodic boundary conditions
JP Thompson, IC Sanchez
The Journal of chemical physics 145 (21), 214103, 2016
Codon selection affects recruitment of ribosome-associating factors during translation
AM Rojano-Nisimura, K Haning, J Janovsky, KA Vasquez, JP Thompson, ...
ACS synthetic biology 9 (2), 329-342, 2019
A Lower Bound on the Partition Function for a Strictly Neutral Charge-Symmetric System
JP Thompson, IC Sanchez
Journal of Statistical Physics 177 (6), 1207-1215, 2019
Putative role of attractive and repulsive forces in the glass transition
IC Sanchez, SP O'Keefe, JP Thompson
Polymer 135, 230-240, 2018
Effects of periodic boundary conditions on the static properties of charged fluids
JP Thompson
The University of Texas at Austin, 2017
Finite-size effects in simulations of electrolyte solutions under periodic boundary conditions
J Thompson, I Sanchez
APS March Meeting Abstracts 2017, M1. 336, 2017
Publisher’s Note:“System-size effects in ionic fluids under periodic boundary conditions”[J. Chem. Phys. 145, 214103 (2016)]
JP Thompson, IC Sanchez
The Journal of chemical physics 146 (3), 039901, 2017
Forcefield Ptm: Development and Testing of a First Generation AMBER Forcefield for Post-Translational Modifications
GA Khoury, JP Thompson, CA Floudas
AIChE Annual Meeting Abstracts, 2012
EOS: A Mixed-Integer Linear Optimization Model for Single-Sequence Beta-Strand Prediction
JP Thompson
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