| Global mapping of the yeast genetic interaction network AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ... Science 303 (5659), 808, 2004 | 2459 | 2004 |
| Population genomics of early events in the ecological differentiation of bacteria BJ Shapiro, J Friedman, OX Cordero, SP Preheim, SC Timberlake, ... Science 336 (6077), 48-51, 2012 | 499 | 2012 |
| Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis MR Farhat, BJ Shapiro, KJ Kieser, R Sultana, KR Jacobson, TC Victor, ... Nature Genetics 45 (10), 1183-1189, 2013 | 461 | 2013 |
| Clinical sequencing uncovers origins and evolution of Lassa virus KG Andersen, BJ Shapiro, CB Matranga, et al. Cell 162, 738-750, 2015 | 254 | 2015 |
| Analysis of ß-1, 3-glucan assembly in Saccharomyces cerevisiae using a synthetic interaction network and altered sensitivity to caspofungin G Lesage, AM Sdicu, P Ménard, J Shapiro, S Hussein, H Bussey Genetics 167 (1), 35-49, 2004 | 204 | 2004 |
| Ordering microbial diversity into ecologically and genetically cohesive units BJ Shapiro, MF Polz Trends in microbiology 22 (5), 235-247, 2014 | 175 | 2014 |
| The advent of genome-wide association studies for bacteria PE Chen, BJ Shapiro Current Opinion in Microbiology 25, 17-24, 2015 | 167 | 2015 |
| An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae G Lesage, J Shapiro, CA Specht, AM Sdicu, P Ménard, S Hussein, ... BMC genetics 6 (1), 8, 2005 | 130 | 2005 |
| Evolutionary consequences of intra-patient phage predation on microbial populations KS Seed, M Yen, BJ Shapiro, IJ Hilaire, RC Charles, JE Teng, LC Ivers, ... eLife 3, e03497, 2014 | 119 | 2014 |
| What is speciation? BJ Shapiro, JB Leducq, J Mallet PLOS Genetics 12 (e1005860), 2016 | 114 | 2016 |
| Elevated rates of horizontal gene transfer in the industrialized human microbiome M Groussin, M Poyet, A Sistiaga, SM Kearney, K Moniz, M Noel, J Hooker, ... Cell 184 (8), 2053-2067. e18, 2021 | 105 | 2021 |
| Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course N Tromas, N Fortin, L Bedrani, Y Terrat, P Cardoso, D Bird, CW Greer, ... The ISME journal 11 (8), 1746-1763, 2017 | 97 | 2017 |
| Looking for Darwin's footprints in the microbial world BJ Shapiro, LA David, J Friedman, EJ Alm Trends in microbiology 17 (5), 196-204, 2009 | 93 | 2009 |
| Population genomics of Mycobacterium tuberculosis in the Inuit RS Lee, N Radomski, JF Proulx, I Levade, BJ Shapiro, F McIntosh, ... Proceedings of the National Academy of Sciences 112 (44), 13609-13614, 2015 | 81 | 2015 |
| How clonal are bacteria over time? BJ Shapiro Current Opinion in Microbiology 31, 116-123, 2016 | 74 | 2016 |
| Microbial speciation BJ Shapiro, MF Polz Cold Spring Harbor perspectives in biology 7 (10), a018143, 2015 | 69 | 2015 |
| VSG switching in Trypanosoma brucei: antigenic variation analysed using RNAi in the absence of immune selection N Aitcheson, S Talbot, J Shapiro, K Hughes, C Adkin, T Butt, K Sheader, ... Molecular microbiology 57 (6), 1608-1622, 2005 | 67 | 2005 |
| Mitochondrial recombination and introgression during speciation by hybridization JB Leducq, M Henault, G Charron, L Nielly-Thibault, Y Terrat, HL Fiumera, ... Molecular Biology and Evolution, 2017 | 58 | 2017 |
| Reproducibility of Vibrionaceae population structure in coastal bacterioplankton G Szabo, SP Preheim, KM Kauffman, LA David, J Shapiro, EJ Alm, ... The ISME journal 7 (3), 509-519, 2013 | 57 | 2013 |
| The Inuit gut microbiome is dynamic over time and shaped by traditional foods G Dubois, C Girard, FJ Lapointe, BJ Shapiro Microbiome 5 (1), 1-12, 2017 | 55 | 2017 |
Eric AlmProfessor of Biological Engineering, MITVerified email at mit.edu
