Rob Beiko
Rob Beiko
Associate Professor of Computer Science, Dalhousie University
Verified email at dal.ca - Homepage
TitleCited byYear
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814, 2013
30712013
STAMP: statistical analysis of taxonomic and functional profiles
DH Parks, GW Tyson, P Hugenholtz, RG Beiko
Bioinformatics 30 (21), 3123-3124, 2014
9682014
Identifying biologically relevant differences between metagenomic communities
DH Parks, RG Beiko
Bioinformatics 26 (6), 715-721, 2010
6312010
Highways of gene sharing in prokaryotes
RG Beiko, TJ Harlow, MA Ragan
Proceedings of the National Academy of Sciences 102 (40), 14332-14337, 2005
4932005
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
BA Curtis, G Tanifuji, F Burki, A Gruber, M Irimia, S Maruyama, MC Arias, ...
Nature 492 (7427), 59, 2012
2942012
A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria
CJ Meehan, RG Beiko
Genome biology and evolution 6 (3), 703-713, 2014
2352014
Prokaryotic evolution and the tree of life are two different things
E Bapteste, MA O'Malley, RG Beiko, M Ereshefsky, JP Gogarten, ...
Biology direct 4 (1), 34, 2009
2182009
Phylogenetic identification of lateral genetic transfer events
RG Beiko, N Hamilton
BMC evolutionary biology 6 (1), 15, 2006
1732006
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
GDP Clarke, RG Beiko, MA Ragan, RL Charlebois
Journal of bacteriology 184 (8), 2072-2080, 2002
1492002
Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation
M Lommer, M Specht, AS Roy, L Kraemer, R Andreson, MA Gutowska, ...
Genome biology 13 (7), R66, 2012
1452012
Microbial shifts in the aging mouse gut
MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, ...
Microbiome 2 (1), 50, 2014
1352014
GenGIS: A geospatial information system for genomic data
DH Parks, M Porter, S Churcher, S Wang, C Blouin, J Whalley, S Brooks, ...
Genome research 19 (10), 1896-1904, 2009
1212009
Interactions in the microbiome: communities of organisms and communities of genes
E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko
FEMS microbiology reviews 38 (1), 90-118, 2014
1112014
Do different surrogate methods detect lateral genetic transfer events of different relative ages?
MA Ragan, TJ Harlow, RG Beiko
Trends in microbiology 14 (1), 4-8, 2006
912006
Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community
LA Hug, RG Beiko, AR Rowe, RE Richardson, EA Edwards
BMC genomics 13 (1), 327, 2012
852012
Lateral genetic transfer: open issues
MA Ragan, RG Beiko
Philosophical Transactions of the Royal Society B: Biological Sciences 364 …, 2009
822009
Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding
X Zhou, LM Jacobus, RE DeWalt, SJ Adamowicz, PDN Hebert
Journal of the North American Benthological Society 29 (3), 814-837, 2010
812010
Virulence Profiling of Streptococcus dysgalactiae Subspecies equisimilis Isolated from Infected Humans Reveals 2 Distinct Genetic Lineages That Do Not …
MR Davies, DJ McMillan, RG Beiko, V Barroso, R Geffers, KS Sriprakash, ...
Clinical infectious diseases 44 (11), 1442-1454, 2007
802007
Fixed-parameter algorithms for maximum agreement forests
C Whidden, RG Beiko, N Zeh
SIAM Journal on Computing 42 (4), 1431-1466, 2013
762013
GenGIS 2: Geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework
DH Parks, T Mankowski, S Zangooei, MS Porter, DG Armanini, DJ Baird, ...
PloS one 8 (7), e69885, 2013
752013
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