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Jie Ren
Jie Ren
Research Scientist at Google Brain
Verified email at google.com - Homepage
Title
Cited by
Cited by
Year
Can you trust your model's uncertainty? evaluating predictive uncertainty under dataset shift
Y Ovadia, E Fertig, J Ren, Z Nado, D Sculley, S Nowozin, J Dillon, ...
Advances in neural information processing systems 32, 2019
7062019
Likelihood ratios for out-of-distribution detection
J Ren, PJ Liu, E Fertig, J Snoek, R Poplin, M Depristo, J Dillon, ...
Advances in Neural Information Processing Systems 32, 2019
3092019
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun
Microbiome 5 (1), 1-20, 2017
2722017
Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun
Nucleic acids research 45 (1), 39-53, 2017
1672017
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
K Song, J Ren, G Reinert, M Deng, MS Waterman, F Sun
Briefings in bioinformatics 15 (3), 343-353, 2014
1632014
Identifying viruses from metagenomic data using deep learning
J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ...
Quantitative Biology 8 (1), 64-77, 2020
1292020
Comparison of metagenomic samples using sequence signatures
B Jiang, K Song, J Ren, M Deng, F Sun, X Zhang
BMC genomics 13 (1), 1-17, 2012
852012
Alignment-free sequence comparison based on next-generation sequencing reads
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
Journal of computational biology 20 (2), 64-79, 2013
752013
Alignment-free sequence analysis and applications
J Ren, X Bai, YY Lu, K Tang, Y Wang, G Reinert, F Sun
Annual Review of Biomedical Data Science 1, 93-114, 2018
582018
Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients
DJ Nusbaum, F Sun, J Ren, Z Zhu, N Ramsy, N Pervolarakis, S Kunde, ...
FEMS microbiology ecology 94 (9), fiy133, 2018
512018
CAFE: aCcelerated Alignment-FrEe sequence analysis
YY Lu, K Tang, J Ren, JA Fuhrman, MS Waterman, F Sun
Nucleic acids research 45 (W1), W554-W559, 2017
472017
Exploring the limits of out-of-distribution detection
S Fort, J Ren, B Lakshminarayanan
Advances in Neural Information Processing Systems 34, 2021
342021
Prediction of virus-host infectious association by supervised learning methods
M Zhang, L Yang, J Ren, NA Ahlgren, JA Fuhrman, F Sun
BMC bioinformatics 18 (3), 143-154, 2017
342017
A network-based integrated framework for predicting virus–prokaryote interactions
W Wang, J Ren, K Tang, E Dart, JC Ignacio-Espinoza, JA Fuhrman, ...
NAR genomics and bioinformatics 2 (2), lqaa044, 2020
312020
Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics
J Ren, K Song, M Deng, G Reinert, CH Cannon, F Sun
Bioinformatics 32 (7), 993-1000, 2016
312016
Can you trust your model’s uncertainty
Y Ovadia, E Fertig, J Ren, Z Nado, D Sculley, S Nowozin, JV Dillon, ...
evaluating predictive uncertainty under dataset shift, 2019
272019
Alignment-free transcriptomic and metatranscriptomic comparison using sequencing signatures with variable length Markov chains
W Liao, J Ren, K Wang, S Wang, F Zeng, Y Wang, F Sun
Scientific reports 6 (1), 1-15, 2016
272016
MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations
Z Zhu, J Ren, S Michail, F Sun
Genome biology 20 (1), 1-13, 2019
222019
Does your dermatology classifier know what it doesn’t know? detecting the long-tail of unseen conditions
AG Roy, J Ren, S Azizi, A Loh, V Natarajan, B Mustafa, N Pawlowski, ...
Medical Image Analysis 75, 102274, 2022
192022
Detection of colorectal cancer in circulating cell-free DNA by methylated CpG tandem amplification and sequencing
J Li, X Zhou, X Liu, J Ren, J Wang, W Wang, Y Zheng, X Shi, T Sun, Z Li, ...
Clinical Chemistry 65 (7), 916-926, 2019
182019
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