Multi-omic graph transformers for cancer classification and interpretation E Kaczmarek, A Jamzad, T Imtiaz, J Nanayakkara, N Renwick, P Mousavi PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 373-384, 2021 | 21 | 2021 |
Characterizing and classifying neuroendocrine neoplasms through microRNA sequencing and data mining J Nanayakkara, K Tyryshkin, X Yang, JJM Wong, K Vanderbeck, ... NAR cancer 2 (3), zcaa009, 2020 | 19 | 2020 |
A miR-375/YAP axis regulates neuroendocrine differentiation and tumorigenesis in lung carcinoid cells X Yang, J Nanayakkara, D Claypool, S Saghafinia, JJM Wong, M Xu, ... Scientific reports 11 (1), 10455, 2021 | 16 | 2021 |
Classifying lung neuroendocrine neoplasms through microRNA Sequence Data Mining JJM Wong, PS Ginter, K Tyryshkin, X Yang, J Nanayakkara, Z Zhou, ... Cancers 12 (9), 2653, 2020 | 13 | 2020 |
Discriminating neoplastic from nonneoplastic tissues using an miRNA-based deep cancer classifier E Kaczmarek, B Pyman, J Nanayakkara, T Tuschl, K Tyryshkin, ... The American Journal of Pathology 192 (2), 344-352, 2022 | 5 | 2022 |
A low-cost kit for gentle, effective and timely extracellular vesicle (GET EVs) isolation: Accelerating development of RNA-based liquid biopsies for neuroendocrine neoplasms B Su, M Jeyhani, X Yang, J Nanayakkara, R Wunsche, N Renwich, S Tsai, ... Cancer Research 84 (6_Supplement), 3624-3624, 2024 | | 2024 |
YAP and TEAD form a transcriptional complex regulating neuroendocrine differentiation and tumorigenesis through a modular mechanism J Nanayakkara, T Imtiaz, X Yang, M Hafner, X Yang, N Renwick Endocrine Abstracts 98, 2023 | | 2023 |
A user-driven machine learning approach for RNA-based sample discrimination and hierarchical classification T Imtiaz, J Nanayakkara, A Fang, D Jomaa, H Mayotte, S Damiani, ... STAR Protocols 4 (4), 102661, 2023 | | 2023 |
Methods for Classifying Cancer N Renwick, K Tyryshkin, J Nanayakkara, X Yang US Patent App. 18/015,989, 2023 | | 2023 |
Topology preserving stratification of tissue neoplasticity using Deep Neural Maps and microRNA signatures E Kaczmarek, J Nanayakkara, A Sedghi, M Pesteie, T Tuschl, N Renwick, ... BMC bioinformatics 23, 1-18, 2022 | | 2022 |
MicroRNA-Based Classification of Neuroendocrine Neoplasms J Nanayakkara, K Tyryshkin, X Yang, J Wong, T Tuschl, N Renwick PANCREAS 49 (3), 481-481, 2020 | | 2020 |