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Alla Gagarinova
Alla Gagarinova
Assistant Professor, Department of Biology, University of New Brunswick
Verified email at unb.ca - Homepage
Title
Cited by
Cited by
Year
A dual function of the CRISPR–Cas system in bacterial antivirus immunity and DNA repair
M Babu, N Beloglazova, R Flick, C Graham, T Skarina, B Nocek, ...
Molecular microbiology 79 (2), 484-502, 2011
3572011
eSGA: E. coli synthetic genetic array analysis
G Butland, M Babu, JJ Díaz-Mejía, F Bohdana, S Phanse, B Gold, W Yang, ...
Nature methods 5 (9), 789-795, 2008
3022008
Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways
M Babu, JJ Díaz-Mejía, J Vlasblom, A Gagarinova, S Phanse, C Graham, ...
PLoS genetics 7 (11), e1002377, 2011
1312011
Global landscape of cell envelope protein complexes in Escherichia coli
M Babu, C Bundalovic-Torma, C Calmettes, S Phanse, Q Zhang, Y Jiang, ...
Nature biotechnology 36 (1), 103-112, 2018
1302018
Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli
M Babu, R Arnold, C Bundalovic-Torma, A Gagarinova, KS Wong, ...
PLoS genetics 10 (2), e1004120, 2014
1282014
Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection
M Babu, AG Gagarinova, JE Brandle, A Wang
Journal of general virology 89 (4), 1069-1080, 2008
902008
Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differ in their ability to overcome Rsv4 …
AG Gagarinova, M Babu, V Poysa, JH Hill, A Wang
Virus research 138 (1-2), 50-56, 2008
642008
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli
J Vlasblom, K Zuberi, H Rodriguez, R Arnold, A Gagarinova, V Deineko, ...
Bioinformatics 31 (3), 306-310, 2015
522015
Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in Escherichia coli
A Kumar, N Beloglazova, C Bundalovic-Torma, S Phanse, V Deineko, ...
Cell reports 14 (3), 648-661, 2016
502016
Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery
A Gagarinova, G Stewart, B Samanfar, S Phanse, CA White, H Aoki, ...
Cell reports 17 (3), 904-916, 2016
482016
Recombination analysis of Soybean mosaic virus sequences reveals evidence of RNA recombination between distinct pathotypes
AG Gagarinova, M Babu, MV Strömvik, A Wang
Virology Journal 5, 1-8, 2008
482008
Rewiring of the human mitochondrial interactome during neuronal reprogramming reveals regulators of the respirasome and neurogenesis
MT Moutaoufik, R Malty, S Amin, Q Zhang, S Phanse, A Gagarinova, ...
Iscience 19, 1114-1132, 2019
442019
Genome-scale genetic manipulation methods for exploring bacterial molecular biology
A Gagarinova, A Emili
Molecular Biosystems 8 (6), 1626-1638, 2012
352012
Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action
B Kintses, PK Jangir, G Fekete, M Számel, O Méhi, R Spohn, L Daruka, ...
Nature Communications 10 (1), 5731, 2019
322019
Array-Based Synthetic Genetic Screens to Map Bacterial Pathways and Functional Networks in Escherichia coli
M Babu, A Gagarinova, A Emili
Network Biology: Methods and Applications, 99-126, 2011
192011
Bioinformatic analysis of temporal and spatial proteome alternations during infections
M Rahmatbakhsh, A Gagarinova, M Babu
Frontiers in Genetics 12, 667936, 2021
182021
Legionella pneumophila effector Lem4 is a membrane-associated protein tyrosine phosphatase
K Beyrakhova, L Li, C Xu, A Gagarinova, M Cygler
Journal of Biological Chemistry 293 (34), 13044-13058, 2018
182018
Ribosome-Dependent ATPase Interacts with Conserved Membrane Protein in Escherichia coli to Modulate Protein Synthesis and Oxidative Phosphorylation
M Babu, H Aoki, WQ Chowdhury, A Gagarinova, C Graham, S Phanse, ...
PloS one 6 (4), e18510, 2011
142011
Mapping bacterial functional networks and pathways in Escherichia coli using synthetic genetic arrays
A Gagarinova, M Babu, J Greenblatt, A Emili
JoVE (Journal of Visualized Experiments), e4056, 2012
132012
Insights from protein-protein interaction studies on bacterial pathogenesis
A Gagarinova, S Phanse, M Cygler, M Babu
Expert Review of Proteomics 14 (9), 779-797, 2017
122017
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