|Community structures of fecal bacteria in cattle from different animal feeding operations|
OC Shanks, CA Kelty, S Archibeque, M Jenkins, RJ Newton, SL McLellan, ...
Applied and environmental microbiology 77 (9), 2992-3001, 2011
|Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study|
AB Boehm, LC Van De Werfhorst, JF Griffith, PA Holden, JA Jay, ...
Water research 47 (18), 6812-6828, 2013
|Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR|
RA Haugland, M Varma, M Sivaganesan, C Kelty, L Peed, OC Shanks
Systematic and Applied Microbiology 33 (6), 348-357, 2010
|Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution|
OC Shanks, E Atikovic, AD Blackwood, J Lu, RT Noble, J Santo Domingo, ...
Applied and environmental microbiology 74 (3), 745-752, 2008
|Animal DNA in PCR reagents plagues ancient DNA research|
JA Leonard, O Shanks, M Hofreiter, E Kreuz, L Hodges, W Ream, ...
Journal of Archaeological Science 34 (9), 1361-1366, 2007
|Quantitative PCR for genetic markers of human fecal pollution|
OC Shanks, CA Kelty, M Sivaganesan, M Varma, RA Haugland
Applied and Environmental Microbiology 75 (17), 5507-5513, 2009
|Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples|
HC Green, RA Haugland, M Varma, HT Millen, MA Borchardt, KG Field, ...
Applied and environmental microbiology 80 (10), 3086-3094, 2014
|Comparison of the microbial community structures of untreated wastewaters from different geographic locales|
OC Shanks, RJ Newton, CA Kelty, SM Huse, ML Sogin, SL McLellan
Applied and environmental microbiology 79 (9), 2906-2913, 2013
|Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon|
OC Shanks, C Nietch, M Simonich, M Younger, D Reynolds, KG Field
Applied and Environmental Microbiology 72 (8), 5537-5546, 2006
|Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study|
BA Layton, Y Cao, DL Ebentier, K Hanley, E Ballesté, J Brandão, ...
Water Research 47 (18), 6897-6908, 2013
|Performance of PCR-Based Assays Targeting Bacteroidales Genetic Markers of Human Fecal Pollution in Sewage and Fecal Samples|
OC Shanks, K White, CA Kelty, M Sivaganesan, J Blannon, M Meckes, ...
Environmental science & technology 44 (16), 6281-6288, 2010
|Identification of chicken-specific fecal microbial sequences using a metagenomic approach|
J Lu, J Santo Domingo, OC Shanks
Water research 41 (16), 3561-3574, 2007
|Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples|
OC Shanks, JW Santo Domingo, R Lamendella, CA Kelty, JE Graham
Applied and environmental microbiology 72 (6), 4054-4060, 2006
|Decay of bacterial pathogens, fecal indicators, and real-time quantitative PCR genetic markers in manure-amended soils|
SW Rogers, M Donnelly, L Peed, CA Kelty, S Mondal, Z Zhong, ...
Applied and Environmental Microbiology 77 (14), 4839-4848, 2011
|Differential decay of human faecal Bacteroides in marine and freshwater|
HC Green, OC Shanks, M Sivaganesan, RA Haugland, KG Field
Environmental microbiology 13 (12), 3235-3249, 2011
|Sewage reflects the distribution of human faecal Lachnospiraceae|
SL McLellan, RJ Newton, JL Vandewalle, OC Shanks, SM Huse, AM Eren, ...
Environmental microbiology 15 (8), 2213-2227, 2013
|Identification of bacterial DNA markers for the detection of human fecal pollution in water|
OC Shanks, JW Santo Domingo, J Lu, CA Kelty, JE Graham
Applied and Environmental Microbiology 73 (8), 2416-2422, 2007
|Dramatic improvements in beach water quality following gull removal|
RR Converse, JL Kinzelman, EA Sams, E Hudgens, AP Dufour, H Ryu, ...
Environmental science & technology 46 (18), 10206-10213, 2012
|Performance assessment PCR-based assays targeting Bacteroidales genetic markers of bovine fecal pollution|
OC Shanks, K White, CA Kelty, S Hayes, M Sivaganesan, M Jenkins, ...
Applied and Environmental Microbiology 76 (5), 1359-1366, 2010
|A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards|
M Sivaganesan, S Seifring, M Varma, RA Haugland, OC Shanks
BMC bioinformatics 9 (1), 120, 2008