Orin Shanks
Orin Shanks
Verified email at epa.gov
Title
Cited by
Cited by
Year
Community structures of fecal bacteria in cattle from different animal feeding operations
OC Shanks, CA Kelty, S Archibeque, M Jenkins, RJ Newton, SL McLellan, ...
Appl. Environ. Microbiol. 77 (9), 2992-3001, 2011
2392011
Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study
AB Boehm, LC Van De Werfhorst, JF Griffith, PA Holden, JA Jay, ...
Water research 47 (18), 6812-6828, 2013
1962013
Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR
RA Haugland, M Varma, M Sivaganesan, C Kelty, L Peed, OC Shanks
Systematic and Applied Microbiology 33 (6), 348-357, 2010
1772010
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution
OC Shanks, E Atikovic, AD Blackwood, J Lu, RT Noble, J Santo Domingo, ...
Appl. Environ. Microbiol. 74 (3), 745-752, 2008
1622008
Animal DNA in PCR reagents plagues ancient DNA research
JA Leonard, O Shanks, M Hofreiter, E Kreuz, L Hodges, W Ream, ...
Journal of Archaeological Science 34 (9), 1361-1366, 2007
1532007
Quantitative PCR for genetic markers of human fecal pollution
OC Shanks, CA Kelty, M Sivaganesan, M Varma, RA Haugland
Appl. Environ. Microbiol. 75 (17), 5507-5513, 2009
1442009
Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon
OC Shanks, C Nietch, M Simonich, M Younger, D Reynolds, KG Field
Appl. Environ. Microbiol. 72 (8), 5537-5546, 2006
1202006
Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples
HC Green, RA Haugland, M Varma, HT Millen, MA Borchardt, KG Field, ...
Appl. Environ. Microbiol. 80 (10), 3086-3094, 2014
1152014
Comparison of the microbial community structures of untreated wastewaters from different geographic locales
OC Shanks, RJ Newton, CA Kelty, SM Huse, ML Sogin, SL McLellan
Appl. Environ. Microbiol. 79 (9), 2906-2913, 2013
1092013
Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study
BA Layton, Y Cao, DL Ebentier, K Hanley, E Ballesté, J Brandão, ...
water research 47 (18), 6897-6908, 2013
982013
Performance of PCR-Based Assays Targeting Bacteroidales Genetic Markers of Human Fecal Pollution in Sewage and Fecal Samples
OC Shanks, K White, CA Kelty, M Sivaganesan, J Blannon, M Meckes, ...
Environmental science & technology 44 (16), 6281-6288, 2010
982010
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples
OC Shanks, JW Santo Domingo, R Lamendella, CA Kelty, JE Graham
Appl. Environ. Microbiol. 72 (6), 4054-4060, 2006
962006
Decay of bacterial pathogens, fecal indicators, and real-time quantitative PCR genetic markers in manure-amended soils
SW Rogers, M Donnelly, L Peed, CA Kelty, S Mondal, Z Zhong, ...
Appl. Environ. Microbiol. 77 (14), 4839-4848, 2011
952011
Identification of chicken-specific fecal microbial sequences using a metagenomic approach
J Lu, J Santo Domingo, OC Shanks
Water research 41 (16), 3561-3574, 2007
952007
Differential decay of human faecal Bacteroides in marine and freshwater
HC Green, OC Shanks, M Sivaganesan, RA Haugland, KG Field
Environmental microbiology 13 (12), 3235-3249, 2011
902011
Sewage reflects the distribution of human faecal Lachnospiraceae
SL McLellan, RJ Newton, JL Vandewalle, OC Shanks, SM Huse, AM Eren, ...
Environmental microbiology 15 (8), 2213-2227, 2013
832013
Identification of bacterial DNA markers for the detection of human fecal pollution in water
OC Shanks, JW Santo Domingo, J Lu, CA Kelty, JE Graham
Appl. Environ. Microbiol. 73 (8), 2416-2422, 2007
742007
Performance assessment PCR-based assays targeting Bacteroidales genetic markers of bovine fecal pollution
OC Shanks, K White, CA Kelty, S Hayes, M Sivaganesan, M Jenkins, ...
Appl. Environ. Microbiol. 76 (5), 1359-1366, 2010
722010
Dramatic improvements in beach water quality following gull removal
RR Converse, JL Kinzelman, EA Sams, E Hudgens, AP Dufour, H Ryu, ...
Environmental science & technology 46 (18), 10206-10213, 2012
682012
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards
M Sivaganesan, S Seifring, M Varma, RA Haugland, OC Shanks
BMC bioinformatics 9 (1), 120, 2008
682008
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