Serafim Batzoglou
Serafim Batzoglou
Illumina
Verified email at cs.stanford.edu
TitleCited byYear
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium
nature 409 (6822), 860, 2001
237422001
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
89252012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
Nature 447 (7146), 799, 2007
48262007
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Rat Genome Sequencing Project Consortium
Nature 428 (6982), 493, 2004
20042004
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
17762007
The ENCODE(ENCyclopedia Of DNA Elements) Project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science(Washington) 306 (5696), 636-40, 2004
1481*2004
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
JE Galagan, SE Calvo, C Cuomo, LJ Ma, JR Wortman, S Batzoglou, ...
Nature 438 (7071), 1105, 2005
12902005
ProbCons: Probabilistic consistency-based multiple sequence alignment
CB Do, MSP Mahabhashyam, M Brudno, S Batzoglou
Genome research 15 (2), 330-340, 2005
11942005
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91, 2012
11642012
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, ...
Genome research 13 (4), 721-731, 2003
11462003
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
10862012
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
10792011
Distribution and intensity of constraint in mammalian genomic sequence
GM Cooper, EA Stone, G Asimenos, ED Green, S Batzoglou, A Sidow
Genome research 15 (7), 901-913, 2005
10042005
Identifying a high fraction of the human genome to be under selective constraint using GERP++
EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou
PLoS computational biology 6 (12), e1001025, 2010
8852010
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
A Valouev, DS Johnson, A Sundquist, C Medina, E Anton, S Batzoglou, ...
Nature methods 5 (9), 829, 2008
7502008
ARACHNE: a whole-genome shotgun assembler
S Batzoglou, DB Jaffe, K Stanley, J Butler, S Gnerre, E Mauceli, B Berger, ...
Genome research 12 (1), 177-189, 2002
6752002
Linking disease associations with regulatory information in the human genome
MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder
Genome research 22 (9), 1748-1759, 2012
5872012
Human and mouse gene structure: comparative analysis and application to exon prediction
S Batzoglou, L Pachter, JP Mesirov, B Berger, ES Lander
Genome research 10 (7), 950-958, 2000
4732000
CONTRAfold: RNA secondary structure prediction without physics-based models
CB Do, DA Woods, S Batzoglou
Bioinformatics 22 (14), e90-e98, 2006
4462006
Multiple sequence alignment
RC Edgar, S Batzoglou
Current opinion in structural biology 16 (3), 368-373, 2006
4412006
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Articles 1–20