Karin Lagesen
Karin Lagesen
Norwegian Veterinary Institute, and University of Oslo
Verified email at - Homepage
Cited by
Cited by
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Research 35 (9), 3100-3108, 2007
The genome sequence of Atlantic cod reveals a unique immune system
B Star, AJ Nederbragt, S Jentoft, U Grimholt, M Malmstrøm, TF Gregers, ...
Nature 477 (7363), 207-210, 2011
Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
H Siddiqui, AJ Nederbragt, K Lagesen, SL Jeansson, KS Jakobsen
BMC microbiology 11, 1-12, 2011
RNammer: consistent annotation of rRNA genes in genomic sequences
K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Res 35 (9), 3100-3108, 2007
Alterations of microbiota in urine from women with interstitial cystitis
H Siddiqui, K Lagesen, AJ Nederbragt, SL Jeansson, KS Jakobsen
BMC microbiology 12, 1-11, 2012
Genome dynamics in major bacterial pathogens
OH Ambur, T Davidsen, SA Frye, SV Balasingham, K Lagesen, T Rognes, ...
FEMS microbiology reviews 33 (3), 453-470, 2009
CMG-biotools, a free workbench for basic comparative microbial genomics
T Vesth, K Lagesen, Ö Acar, D Ussery
PloS one 8 (4), e60120, 2013
Genomic characterization of Campylobacter jejuni strain M1
C Friis, TM Wassenaar, MA Javed, L Snipen, K Lagesen, PF Hallin, ...
PloS one 5 (8), e12253, 2010
Biased distribution of DNA uptake sequences towards genome maintenance genes
T Davidsen, EA Rødland, K Lagesen, E Seeberg, T Rognes, T Tønjum
Nucleic acids research 32 (3), 1050-1058, 2004
Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment
X Xiao, H Sogge, K Lagesen, A Tooming-Klunderud, KS Jakobsen, ...
PloS one 9 (8), e106510, 2014
Genome update: the 1000th genome–a cautionary tale
K Lagesen, DW Ussery, TM Wassenaar
Microbiology 156 (3), 603-608, 2010
The genus Burkholderia: analysis of 56 genomic sequences
DW Ussery, K Kiil, K Lagesen, T Sicheritz-Ponten, J Bohlin, ...
Microbial pathogenomics 6, 140-157, 2009
On the Origins of a Vibrio Species
T Vesth, TM Wassenaar, PF Hallin, L Snipen, K Lagesen, DW Ussery
Microbial ecology 59, 1-13, 2010
Analysis of intra-genomic GC content homogeneity within prokaryotes
J Bohlin, L Snipen, SP Hardy, AB Kristoffersen, K Lagesen, T Dønsvik, ...
BMC genomics 11, 1-8, 2010
From green to red: Horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains
A Tooming-Klunderud, H Sogge, TB Rounge, AJ Nederbragt, K Lagesen, ...
Applied and environmental microbiology 79 (21), 6803-6812, 2013
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
K Khelik, K Lagesen, GK Sandve, T Rognes, AJ Nederbragt
BMC bioinformatics 18, 1-14, 2017
Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods
J Bohlin, L Snipen, A Cloeckaert, K Lagesen, D Ussery, AB Kristoffersen, ...
BMC evolutionary biology 10, 1-16, 2010
Pathogens in urine from a female patient with overactive bladder syndrome detected by culture-independent high throughput sequencing: a case report
H Siddiqui, K Lagesen, AJ Nederbragt, LM Eri, SL Jeansson, ...
The open microbiology journal 8, 148, 2014
Occurrence of quinolone resistant E. coli originating from different animal species in Norway
H Kaspersen, AM Urdahl, R Simm, JS Slettemeås, K Lagesen, ...
Veterinary microbiology 217, 25-31, 2018
Multilocus variable-number tandem-repeat analysis of Yersinia ruckeri confirms the existence of host specificity, geographic endemism, and anthropogenic dissemination of …
S Gulla, AC Barnes, TJ Welch, JL Romalde, D Ryder, MJ Ormsby, ...
Applied and environmental microbiology 84 (16), e00730-18, 2018
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