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Margaret E. Johnson
Margaret E. Johnson
Associate Professor of Biophysics, Johns Hopkins University
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
Current status of the AMOEBA polarizable force field
JW Ponder, C Wu, P Ren, VS Pande, JD Chodera, MJ Schnieders, ...
The journal of physical chemistry B 114 (8), 2549-2564, 2010
14372010
Tetrahedral structure or chains for liquid water
T Head-Gordon, ME Johnson
Proceedings of the National Academy of Sciences 103 (21), 7973-7977, 2006
3242006
Representability problems for coarse-grained water potentials
ME Johnson, T Head-Gordon, AA Louis
The Journal of chemical physics 126 (14), 2007
2702007
Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks
ME Johnson, G Hummer
Biophysical Journal 100 (3), 32a, 2011
842011
Hydration water dynamics near biological interfaces
ME Johnson, C Malardier-Jugroot, RK Murarka, T Head-Gordon
The Journal of Physical Chemistry B 113 (13), 4082-4092, 2009
752009
Effects of co-solvents on peptide hydration water structure and dynamics
ME Johnson, C Malardier-Jugroot, T Head-Gordon
Physical Chemistry Chemical Physics 12 (2), 393-405, 2010
612010
Characterization of a dynamic string method for the construction of transition pathways in molecular reactions
ME Johnson, G Hummer
The Journal of Physical Chemistry B 116 (29), 8573-8583, 2012
552012
Cytosolic proteins can exploit membrane localization to trigger functional assembly
ON Yogurtcu, ME Johnson
PLoS computational biology 14 (3), e1006031, 2018
522018
Aqueous peptides as experimental models for hydration water dynamics near protein surfaces
C Malardier-Jugroot, ME Johnson, RK Murarka, T Head-Gordon
Physical Chemistry Chemical Physics 10 (32), 4903-4908, 2008
452008
Interface-resolved network of protein-protein interactions
ME Johnson, G Hummer
PLoS computational biology 9 (5), e1003065, 2013
382013
Assessing thermodynamic-dynamic relationships for waterlike liquids
ME Johnson, T Head-Gordon
The Journal of chemical physics 130 (21), 2009
362009
Free-propagator reweighting integrator for single-particle dynamics in reaction-diffusion models of heterogeneous protein-protein interaction systems
ME Johnson, G Hummer
Physical Review X 4 (3), 031037, 2014
352014
Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates
ON Yogurtcu, ME Johnson
The Journal of Chemical Physics 143 (8), 2015
342015
Structure and water dynamics of aqueous peptide solutions in the presence of co-solvents
C Malardier-Jugroot, DT Bowron, AK Soper, ME Johnson, T Head-Gordon
Physical Chemistry Chemical Physics 12 (2), 382-392, 2010
342010
NERDSS: a nonequilibrium simulator for multibody self-assembly at the cellular scale
MJ Varga, Y Fu, S Loggia, ON Yogurtcu, ME Johnson
Biophysical Journal 118 (12), 3026-3040, 2020
252020
Quantifying the roles of space and stochasticity in computer simulations for cell biology and cellular biochemistry
ME Johnson, A Chen, JR Faeder, P Henning, II Moraru, ...
Molecular Biology of the Cell 32 (2), 186-210, 2021
242021
Protein-protein binding selectivity and network topology constrain global and local properties of interface binding networks
DO Holland, BH Shapiro, P Xue, ME Johnson
Scientific Reports 7 (1), 5631, 2017
192017
Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis
DO Holland, ME Johnson
PLOS Computational Biology 14 (3), e1006022, 2018
162018
Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction-Diffusion Algorithm
M Johnson
162018
A systems approach identifies Enhancer of Zeste Homolog 2 (EZH2) as a protective factor in epilepsy
N Khan, B Schoenike, T Basu, H Grabenstatter, G Rodriguez, C Sindic, ...
PLoS One 14 (12), e0226733, 2019
142019
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