|Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment|
E Hodges, A Molaro, CO Dos Santos, P Thekkat, Q Song, PJ Uren, J Park, ...
Molecular cell 44 (1), 17-28, 2011
|Site identification in high-throughput RNA–protein interaction data|
PJ Uren, E Bahrami-Samani, SC Burns, M Qiao, FV Karginov, E Hodges, ...
Bioinformatics 28 (23), 3013-3020, 2012
|Aberrant sperm DNA methylation predicts male fertility status and embryo quality|
KI Aston, PJ Uren, TG Jenkins, A Horsager, BR Cairns, AD Smith, ...
Fertility and sterility 104 (6), 1388-1397. e5, 2015
|WTAP is a novel oncogenic protein in acute myeloid leukemia|
H Bansal, Q Yihua, SP Iyer, S Ganapathy, D Proia, LO Penalva, PJ Uren, ...
Leukemia 28 (5), 1171-1174, 2014
|Molecular hierarchy of mammary differentiation yields refined markers of mammary stem cells|
CO dos Santos, C Rebbeck, E Rozhkova, A Valentine, A Samuels, ...
Proceedings of the National Academy of Sciences 110 (18), 7123-7130, 2013
|Genomic analyses of the RNA-binding protein Hu antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites|
PJ Uren, SC Burns, J Ruan, KK Singh, AD Smith, LOF Penalva
Journal of Biological Chemistry 286 (43), 37063-37066, 2011
|The RNA-binding protein Musashi1 affects medulloblastoma growth via a network of cancer-related genes and is an indicator of poor prognosis|
DT Vo, D Subramaniam, M Remke, TL Burton, PJ Uren, JA Gelfond, ...
The American journal of pathology 181 (5), 1762-1772, 2012
|Riborex: fast and flexible identification of differential translation from Ribo-seq data|
W Li, W Wang, PJ Uren, LOF Penalva, AD Smith
Bioinformatics 33 (11), 1735-1737, 2017
|Genomic analyses reveal broad impact of miR-137 on genes associated with malignant transformation and neuronal differentiation in glioblastoma cells|
S Tamim, DT Vo, PJ Uren, M Qiao, E Bindewald, WK Kasprzak, ...
PloS one 9 (1), e85591, 2014
|IGF2BP3 modulates the interaction of invasion-associated transcripts with RISC|
H Ennajdaoui, JM Howard, T Sterne-Weiler, F Jahanbani, DJ Coyne, ...
Cell reports 15 (9), 1876-1883, 2016
|RNA-binding protein Musashi1 is a central regulator of adhesion pathways in glioblastoma|
PJ Uren, DT Vo, PR de Araujo, R Pötschke, SC Burns, E Bahrami-Samani, ...
Molecular and cellular biology 35 (17), 2965-2978, 2015
|Leveraging cross-link modification events in CLIP-seq for motif discovery|
E Bahrami-Samani, LOF Penalva, AD Smith, PJ Uren
Nucleic acids research 43 (1), 95-103, 2015
|High-throughput analyses of hnRNP H1 dissects its multi-functional aspect|
PJ Uren, E Bahrami-Samani, PR de Araujo, C Vogel, M Qiao, SC Burns, ...
RNA biology 13 (4), 400-411, 2016
|A profile of transcriptomic changes in the rd10 mouse model of retinitis pigmentosa|
PJ Uren, JT Lee, MM Doroudchi, AD Smith, A Horsager
Molecular vision 20, 1612, 2014
|Musashi1 impacts radio-resistance in glioblastoma by controlling DNA-protein kinase catalytic subunit|
PR de Araujo, A Gorthi, AE da Silva, SS Tonapi, DT Vo, SC Burns, M Qiao, ...
The American journal of pathology 186 (9), 2271-2278, 2016
|RNA binding protein HuR regulates the expression of ABCA1|
CM Ramírez, CS Lin, K Abdelmohsen, L Goedeke, JH Yoon, ...
Journal of lipid research 55 (6), 1066-1076, 2014
|A mouse model of targeted Musashi1 expression in whole intestinal epithelium suggests regulatory roles in cell cycle and stemness|
FM Cambuli, BR Correa, A Rezza, SC Burns, M Qiao, PJ Uren, E Kress, ...
Stem cells 33 (12), 3621-3634, 2015
|Computational challenges, tools, and resources for analyzing co‐and post‐transcriptional events in high throughput|
E Bahrami‐Samani, DT Vo, PR de Araujo, C Vogel, AD Smith, ...
Wiley Interdisciplinary Reviews: RNA 6 (3), 291-310, 2015
|Promoter prediction using physico-chemical properties of DNA|
P Uren, RM Cameron-Jones, A Sale
International Symposium on Computational Life Science, 21-31, 2006
|Establishing a stable, repeatable platform for measuring changes in sperm DNA methylation|
M Abbasi, AD Smith, H Swaminathan, P Sangngern, A Douglas, ...
Clinical epigenetics 10 (1), 1-12, 2018