Amit Deshwar
Amit Deshwar
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TitleCited byYear
Inferring clonal evolution of tumors from single nucleotide somatic mutations
W Jiao, S Vembu, AG Deshwar, L Stein, Q Morris
BMC bioinformatics 15 (1), 35, 2014
PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
AG Deshwar, S Vembu, CK Yung, GH Jang, L Stein, Q Morris
Genome biology 16 (1), 35, 2015
Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
G Quon, S Haider, AG Deshwar, A Cui, PC Boutros, Q Morris
Genome medicine 5 (3), 29, 2013
SNP-mediated disruption of CTCF binding at the IFITM3 promoter is associated with risk of severe influenza in humans
EK Allen, AG Randolph, T Bhangale, P Dogra, M Ohlson, CM Oshansky, ...
Nature medicine 23 (8), 975, 2017
Correction of a splicing defect in a mouse model of congenital muscular dystrophy type 1A using a homology-directed-repair-independent mechanism
DU Kemaladewi, E Maino, E Hyatt, H Hou, M Ding, KM Place, X Zhu, ...
Nature medicine 23 (8), 984, 2017
D-mannose induces regulatory T cells and suppresses immunopathology
D Zhang, C Chia, X Jiao, W Jin, S Kasagi, R Wu, JE Konkel, ...
Nature medicine 23 (9), 1036, 2017
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, SG Rosado, D Rosebrock, ...
BioRxiv, 161562, 2018
PLIDA: cross-platform gene expression normalization using perturbed topic models
AG Deshwar, Q Morris
Bioinformatics 30 (7), 956-961, 2013
ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles
CV Anghel, G Quon, S Haider, F Nguyen, AG Deshwar, QD Morris, ...
BMC bioinformatics 16 (1), 156, 2015
Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression
AM Mezlini, B Wang, A Deshwar, Q Morris, A Goldenberg
PloS one 8 (10), e73168, 2013
COSSMO: predicting competitive alternative splice site selection using deep learning
H Bretschneider, S Gandhi, AG Deshwar, K Zuberi, BJ Frey
Bioinformatics 34 (13), i429-i437, 2018
Reconstructing subclonal composition and evolution from whole genome sequencing of tumors
AG Deshwar, S Vembu, CK Yung, GH Jang, L Stein, Q Morris
arXiv preprint arXiv:1406.7250, 2014
Relapsing-remitting multiple sclerosis classification using elastic net logistic regression on gene expression data
C Zhao, AG Deshwar, Q Morris
Systems Biomedicine 1 (4), 247-253, 2013
Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ...
Cancer Research 78 (13 Supplement), 3000-3000, 2018
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
bioRxiv, 312041, 2018
TrackSig: reconstructing evolutionary trajectories of mutation signature exposure
Y Rubanova, R Li, J Wintersinger, N Sahin, A Deshwar, Q Morris, ...
BioRxiv, 260471, 2018
PhyloSpan: using multi-mutation reads to resolve subclonal architectures from heterogeneous tumor samples
AG Deshwar, L Boyles, J Wintersinger, PC Boutros, YW Teh, Q Morris
Cancer Research 75 (15 Supplement), 4865-4865, 2015
Comparing nonparametric bayesian tree priors for clonal reconstruction of tumors
AG Deshwar, S Vembu, Q Morris
Pacific Symposium on Biocomputing Co-Chairs, 20-31, 2014
Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data
W Jiao, S Vembu, AG Deshwar, L Stein, Q Morris
CoRR, abs/1210.3384, 2012
Computational purification of tumor gene expression data
A Deshwar, G Quon, Q Morris
BMC bioinformatics 12 (11), A9, 2011
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Articles 1–20