Manuel Irimia
TitleCited byYear
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172, 2013
The evolutionary landscape of alternative splicing in vertebrate species
NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ...
Science 338 (6114), 1587-1593, 2012
Elephant shark genome provides unique insights into gnathostome evolution
B Venkatesh, AP Lee, V Ravi, AK Maurya, MM Lian, JB Swann, Y Ohta, ...
Nature 505 (7482), 174, 2014
Widespread intron retention in mammals functionally tunes transcriptomes
U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ...
Genome research 24 (11), 1774-1786, 2014
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
BA Curtis, G Tanifuji, F Burki, A Gruber, M Irimia, S Maruyama, MC Arias, ...
Nature 492 (7427), 59, 2012
Tissue-specific alternative splicing remodels protein-protein interaction networks
JD Ellis, M Barrios-Rodiles, R Çolak, M Irimia, TH Kim, JA Calarco, ...
Molecular cell 46 (6), 884-892, 2012
A highly conserved program of neuronal microexons is misregulated in autistic brains
M Irimia, RJ Weatheritt, JD Ellis, NN Parikshak, ...
Cell 159 (7), 1511-1523, 2014
MBNL proteins repress ES-cell-specific alternative splicing and reprogramming
H Han, M Irimia, PJ Ross, HK Sung, B Alipanahi, L David, A Golipour, ...
Nature 498 (7453), 241, 2013
Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism
NN Parikshak, V Swarup, TG Belgard, M Irimia, G Ramaswami, ...
Nature 540 (7633), 423, 2016
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary
T Khare, S Pai, K Koncevicius, M Pal, E Kriukiene, Z Liutkeviciute, M Irimia, ...
Nature structural & molecular biology 19 (10), 1037, 2012
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ...
Genome biology 14 (2), R11, 2013
A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals
RM Labbé, M Irimia, KW Currie, A Lin, SJ Zhu, DDR Brown, EJ Ross, ...
Stem cells 30 (8), 1734-1745, 2012
Alternative splicing: decoding an expansive regulatory layer
M Irimia, BJ Blencowe
Current opinion in cell biology 24 (3), 323-332, 2012
Origin of spliceosomal introns and alternative splicing
M Irimia, SW Roy
Cold Spring Harbor perspectives in biology 6 (6), a016071, 2014
Regulated aggregative multicellularity in a close unicellular relative of metazoa
A Sebé-Pedrós, M Irimia, J del Campo, H Parra-Acero, C Russ, ...
Elife 2, e01287, 2013
Spliceosomal introns as tools for genomic and evolutionary analysis
M Irimia, SW Roy
Nucleic acids research 36 (5), 1703-1712, 2008
Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
M Irimia, JJ Tena, MS Alexis, A Fernandez-Miñan, I Maeso, O Bogdanović, ...
Genome research 22 (12), 2356-2367, 2012
A global regulatory mechanism for activating an exon network required for neurogenesis
B Raj, M Irimia, U Braunschweig, T Sterne-Weiler, D O’Hanlon, ZY Lin, ...
Molecular cell 56 (1), 90-103, 2014
Coevolution of genomic intron number and splice sites
M Irimia, D Penny, SW Roy
Trends in Genetics 23 (7), 321-325, 2007
MBNL1 and RBFOX2 cooperate to establish a splicing programme involved in pluripotent stem cell differentiation
JP Venables, L Lapasset, G Gadea, P Fort, R Klinck, M Irimia, E Vignal, ...
Nature communications 4, 2480, 2013
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Articles 1–20