Sergey Koren
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
56762012
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy
Genome research 27 (5), 722-736, 2017
17722017
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
15402012
Assembly algorithms for next-generation sequencing data
JR Miller, S Koren, G Sutton
Genomics 95 (6), 315-327, 2010
12042010
Hybrid error correction and de novo assembly of single-molecule sequencing reads
S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ...
Nature biotechnology 30 (7), 693-700, 2012
8992012
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
7122018
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome Research 22 (3), 557-567, 2012
6952012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy
Nature biotechnology 33 (6), 623-630, 2015
6632015
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
TJ Treangen, BD Ondov, S Koren, AM Phillippy
Genome biology 15 (11), 524, 2014
6492014
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17 (1), 132, 2016
6272016
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
5862013
Aggressive assembly of pyrosequencing reads with mates
JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ...
Bioinformatics 24 (24), 2818-2824, 2008
5452008
Assemblathon 1: A competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5062011
The bonobo genome compared with the chimpanzee and human genomes
K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ...
Nature 486 (7404), 527-531, 2012
4602012
Reducing assembly complexity of microbial genomes with single-molecule sequencing
S Koren, GP Harhay, TPL Smith, JL Bono, DM Harhay, SD Mcvey, ...
Genome biology 14 (9), R101, 2013
3402013
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
S Koren, AM Phillippy
Current opinion in microbiology 23, 110-120, 2015
3052015
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
2822017
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
M Gulia-Nuss, AB Nuss, JM Meyer, DE Sonenshine, RM Roe, ...
Nature communications 7 (1), 1-13, 2016
2602016
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ...
Genome research 27 (5), 849-864, 2017
2182017
Next generation sequence assembly with AMOS
TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop
Curr Protoc Bioinformatics, 2011
1922011
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Articles 1–20