Follow
Fiona J Whelan
Title
Cited by
Cited by
Year
Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
JT Lau, FJ Whelan, I Herath, CH Lee, SM Collins, P Bercik, MG Surette
Genome medicine 8, 1-10, 2016
2552016
Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age
JC Stearns, CJ Davidson, S McKeon, FJ Whelan, ME Fontes, ...
The ISME journal 9 (5), 1246-1259, 2015
2492015
Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet
W Gohir, FJ Whelan, MG Surette, C Moore, JD Schertzer, DM Sloboda
Gut microbes 6 (5), 310-320, 2015
2292015
The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly
FJ Whelan, CP Verschoor, JC Stearns, L Rossi, K Luinstra, M Loeb, ...
Annals of the American Thoracic Society 11 (4), 513-521, 2014
2252014
Prevalence and outcomes of Achromobacter species infections in adults with cystic fibrosis: a North American cohort study
BD Edwards, J Greysson-Wong, R Somayaji, B Waddell, FJ Whelan, ...
Journal of clinical microbiology 55 (7), 2074-2085, 2017
872017
A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
FJ Whelan, MG Surette
Microbiome 5, 1-13, 2017
862017
Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota
FJ Whelan, B Waddell, SA Syed, S Shekarriz, HR Rabin, MD Parkins, ...
Nature Microbiology 5 (2), 379-390, 2020
842020
Horizontal gene transfer as a source of conflict and cooperation in prokaryotes
RJ Hall, FJ Whelan, JO McInerney, Y Ou, MR Domingo-Sananes
Frontiers in Microbiology 11, 1569, 2020
802020
Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
FJ Whelan, AA Heirali, L Rossi, HR Rabin, MD Parkins, MG Surette
PloS one 12 (3), e0172811, 2017
762017
The evolution of the class A scavenger receptors
FJ Whelan, CJ Meehan, GB Golding, BJ McConkey, DM E Bowdish
BMC evolutionary biology 12, 1-11, 2012
762012
Coinfinder: detecting significant associations and dissociations in pangenomes
FJ Whelan, M Rusilowicz, JO McInerney
Microbial genomics 6 (3), e000338, 2020
612020
The effects of inhaled aztreonam on the cystic fibrosis lung microbiome
AA Heirali, ML Workentine, N Acosta, A Poonja, DG Storey, R Somayaji, ...
Microbiome 5, 1-14, 2017
582017
The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years
N Acosta, FJ Whelan, R Somayaji, A Poonja, MG Surette, HR Rabin, ...
Annals of the American Thoracic Society 14 (8), 1288-1297, 2017
522017
The evolution of the scavenger receptor cysteine-rich domain of the class A scavenger receptors
NVL Yap, FJ Whelan, DME Bowdish, GB Golding
Frontiers in immunology 6, 342, 2015
492015
Streptococcus pneumoniae colonization disrupts the microbial community within the upper respiratory tract of aging mice
N Thevaranjan, FJ Whelan, A Puchta, E Ashu, L Rossi, MG Surette, ...
Infection and immunity 84 (4), 906-916, 2016
482016
Evidence for selection in the abundant accessory gene content of a prokaryote pangenome
FJ Whelan, RJ Hall, JO McInerney
Molecular Biology and Evolution, 2021
392021
Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions
GA O’Toole, A Crabbé, R Kümmerli, JJ LiPuma, JM Bomberger, ...
mBio 12 (5), e01763-21, 2021
352021
Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis
SA Syed, FJ Whelan, B Waddell, HR Rabin, MD Parkins, MG Surette
Annals of the American Thoracic Society 13 (12), 2132-2142, 2016
322016
Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing?
FJ Whelan, MG Surette
Annals of the American Thoracic Society 12 (Supplement 2), S207-S211, 2015
282015
Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility
Hall RJ, Whelan FJ, Cummins EA, Connor C, McNally A, McInerney JO
Microbial Genomics 7 (9), 2021
252021
The system can't perform the operation now. Try again later.
Articles 1–20