Fiona  J Whelan
Title
Cited by
Cited by
Year
Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
JT Lau, FJ Whelan, I Herath, CH Lee, SM Collins, P Bercik, MG Surette
Genome medicine 8 (1), 1-10, 2016
1422016
The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly
FJ Whelan, CP Verschoor, JC Stearns, L Rossi, K Luinstra, M Loeb, ...
Annals of the American Thoracic Society 11 (4), 513-521, 2014
1362014
Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age
JC Stearns, CJ Davidson, S McKeon, FJ Whelan, ME Fontes, ...
The ISME journal 9 (5), 1246-1259, 2015
1262015
Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet
W Gohir, FJ Whelan, MG Surette, C Moore, JD Schertzer, DM Sloboda
Gut microbes 6 (5), 310-320, 2015
1172015
Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
FJ Whelan, AA Heirali, L Rossi, HR Rabin, MD Parkins, MG Surette
PloS one 12 (3), e0172811, 2017
582017
A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
FJ Whelan, MG Surette
Microbiome 5 (1), 1-13, 2017
562017
The evolution of the class A scavenger receptors
FJ Whelan, CJ Meehan, GB Golding, BJ McConkey, DME Bowdish
BMC evolutionary biology 12 (1), 1-11, 2012
562012
Prevalence and outcomes of Achromobacter species infections in adults with cystic fibrosis: a North American cohort study
BD Edwards, J Greysson-Wong, R Somayaji, B Waddell, FJ Whelan, ...
Journal of clinical microbiology 55 (7), 2074-2085, 2017
382017
The effects of inhaled aztreonam on the cystic fibrosis lung microbiome
AA Heirali, ML Workentine, N Acosta, A Poonja, DG Storey, R Somayaji, ...
Microbiome 5 (1), 1-14, 2017
362017
Streptococcus pneumoniae colonization disrupts the microbial community within the upper respiratory tract of aging mice
N Thevaranjan, FJ Whelan, A Puchta, E Ashu, L Rossi, MG Surette, ...
Infection and immunity 84 (4), 906-916, 2016
322016
The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years
N Acosta, FJ Whelan, R Somayaji, A Poonja, MG Surette, HR Rabin, ...
Annals of the American Thoracic Society 14 (8), 1288-1297, 2017
292017
The evolution of the scavenger receptor cysteine-rich domain of the class A scavenger receptors
NVL Yap, FJ Whelan, DME Bowdish, GB Golding
Frontiers in immunology 6, 342, 2015
282015
Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota
FJ Whelan, B Waddell, SA Syed, S Shekarriz, HR Rabin, MD Parkins, ...
Nature Microbiology 5 (2), 379-390, 2020
192020
Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing?
FJ Whelan, MG Surette
Annals of the American Thoracic Society 12 (Supplement 2), S207-S211, 2015
182015
Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis
SA Syed, FJ Whelan, B Waddell, HR Rabin, MD Parkins, MG Surette
Annals of the American Thoracic Society 13 (12), 2132-2142, 2016
142016
Partitioning and correlating subgroup characteristics from Aligned Pattern Clusters
ESA Lee, FJ Whelan, DME Bowdish, AKC Wong
Bioinformatics 32 (16), 2427-2434, 2016
122016
Streptococcus pneumoniae colonization is required to alter the nasal microbiota in cigarette smoke-exposed mice
P Shen, FJ Whelan, LP Schenck, JJC McGrath, G Vanderstocken, ...
Infection and immunity 85 (10), 2017
102017
A guide to bioinformatics for immunologists
FJ Whelan, N Yap, MG Surette, GB Golding, DME Bowdish
Frontiers in immunology 4, 416, 2013
102013
Coinfinder: detecting significant associations and dissociations in pangenomes
FJ Whelan, M Rusilowicz, JO McInerney
Microbial Genomics 6 (3), 2020
52020
Pangenomes and Selection: The Public Goods Hypothesis
JO McInerney, FJ Whelan, MR Domingo-Sananes, A McNally, ...
The Pangenome, 151, 2020
52020
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