| Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling JT Lau, FJ Whelan, I Herath, CH Lee, SM Collins, P Bercik, MG Surette Genome medicine 8, 1-10, 2016 | 251 | 2016 |
| Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age JC Stearns, CJ Davidson, S McKeon, FJ Whelan, ME Fontes, ... The ISME journal 9 (5), 1246-1259, 2015 | 240 | 2015 |
| Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet W Gohir, FJ Whelan, MG Surette, C Moore, JD Schertzer, DM Sloboda Gut microbes 6 (5), 310-320, 2015 | 227 | 2015 |
| The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly FJ Whelan, CP Verschoor, JC Stearns, L Rossi, K Luinstra, M Loeb, ... Annals of the American Thoracic Society 11 (4), 513-521, 2014 | 222 | 2014 |
| A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis FJ Whelan, MG Surette Microbiome 5, 1-13, 2017 | 86 | 2017 |
| Prevalence and outcomes of Achromobacter species infections in adults with cystic fibrosis: a North American cohort study BD Edwards, J Greysson-Wong, R Somayaji, B Waddell, FJ Whelan, ... Journal of clinical microbiology 55 (7), 2074-2085, 2017 | 86 | 2017 |
| Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota FJ Whelan, B Waddell, SA Syed, S Shekarriz, HR Rabin, MD Parkins, ... Nature Microbiology 5 (2), 379-390, 2020 | 80 | 2020 |
| Horizontal gene transfer as a source of conflict and cooperation in prokaryotes RJ Hall, FJ Whelan, JO McInerney, Y Ou, MR Domingo-Sananes Frontiers in Microbiology 11, 1569, 2020 | 79 | 2020 |
| Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis FJ Whelan, AA Heirali, L Rossi, HR Rabin, MD Parkins, MG Surette PloS one 12 (3), e0172811, 2017 | 76 | 2017 |
| The evolution of the class A scavenger receptors FJ Whelan, CJ Meehan, GB Golding, BJ McConkey, DM E Bowdish BMC evolutionary biology 12, 1-11, 2012 | 76 | 2012 |
| Coinfinder: detecting significant associations and dissociations in pangenomes FJ Whelan, M Rusilowicz, JO McInerney Microbial genomics 6 (3), e000338, 2020 | 59 | 2020 |
| The effects of inhaled aztreonam on the cystic fibrosis lung microbiome AA Heirali, ML Workentine, N Acosta, A Poonja, DG Storey, R Somayaji, ... Microbiome 5, 1-14, 2017 | 58 | 2017 |
| The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years N Acosta, FJ Whelan, R Somayaji, A Poonja, MG Surette, HR Rabin, ... Annals of the American Thoracic Society 14 (8), 1288-1297, 2017 | 51 | 2017 |
| The evolution of the scavenger receptor cysteine-rich domain of the class A scavenger receptors NVL Yap, FJ Whelan, DME Bowdish, GB Golding Frontiers in immunology 6, 342, 2015 | 48 | 2015 |
| Streptococcus pneumoniae colonization disrupts the microbial community within the upper respiratory tract of aging mice N Thevaranjan, FJ Whelan, A Puchta, E Ashu, L Rossi, MG Surette, ... Infection and immunity 84 (4), 906-916, 2016 | 46 | 2016 |
| Evidence for selection in the abundant accessory gene content of a prokaryote pangenome FJ Whelan, RJ Hall, JO McInerney Molecular Biology and Evolution, 2021 | 37 | 2021 |
| Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions GA O’Toole, A Crabbé, R Kümmerli, JJ LiPuma, JM Bomberger, ... mBio 12 (5), e01763-21, 2021 | 34 | 2021 |
| Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis SA Syed, FJ Whelan, B Waddell, HR Rabin, MD Parkins, MG Surette Annals of the American Thoracic Society 13 (12), 2132-2142, 2016 | 32 | 2016 |
| Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing? FJ Whelan, MG Surette Annals of the American Thoracic Society 12 (Supplement 2), S207-S211, 2015 | 28 | 2015 |
| Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility Hall RJ, Whelan FJ, Cummins EA, Connor C, McNally A, McInerney JO Microbial Genomics 7 (9), 2021 | 22 | 2021 |
Mike SuretteMcMaster UniversityVerified email at mcmaster.ca
