Marco Fondi
Marco Fondi
Dep. of Biology, University of Florence
Verified email at - Homepage
Cited by
Cited by
MeDuSa: a multi-draft based scaffolder
E Bosi, B Donati, M Galardini, S Brunetti, MF Sagot, P Liˇ, P Crescenzi, ...
Bioinformatics 31 (15), 2443-2451, 2015
The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis
M Brilli, M Fondi, R Fani, A Mengoni, L Ferri, M Bazzicalupo, EG Biondi
BMC systems biology 4 (1), 1-16, 2010
A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land
G Emiliani, M Fondi, R Fani, S Gribaldo
Biology Direct 4 (1), 1-12, 2009
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity
E Bosi, JM Monk, RK Aziz, M Fondi, V Nizet, Bě Palsson
Proceedings of the National Academy of Sciences 113 (26), E3801-E3809, 2016
Multi-omics and metabolic modelling pipelines: challenges and tools for systems microbiology
M Fondi, P Li˛
Microbiological research 171, 52-64, 2015
A novel resistance mechanism to triclosan that suggests horizontal gene transfer and demonstrates a potential selective pressure for reduced biocide susceptibility in clinicalá…
ML Ciusa, L Furi, D Knight, F Decorosi, M Fondi, C Raggi, JR Coelho, ...
International journal of antimicrobial agents 40 (3), 210-220, 2012
Origin and evolution of metabolic pathways
R Fani, M Fondi
Physics of Life Reviews 6 (1), 23-52, 2009
Sponge-associated microbial Antarctic communities exhibiting antimicrobial activity against Burkholderia cepacia complex bacteria
MC Papaleo, M Fondi, I Maida, E Perrin, AL Giudice, L Michaud, ...
Biotechnology advances 30 (1), 272-293, 2012
Large-scale analysis of plasmid relationships through gene-sharing networks
M Tamminen, M Virta, R Fani, M Fondi
Molecular biology and evolution 29 (4), 1225-1240, 2012
Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome
M Fondi, G Bacci, M Brilli, MC Papaleo, A Mengoni, M Vaneechoutte, ...
BMC evolutionary biology 10 (1), 1-15, 2010
Deciphering the role of RND efflux transporters in Burkholderia cenocepacia
S Bazzini, C Udine, A Sass, MR Pasca, F Longo, G Emiliani, M Fondi, ...
PloS one 6 (4), e18902, 2011
The horizontal flow of the plasmid resistome: clues from inter‐generic similarity networks
M Fondi, R Fani
Environmental microbiology 12 (12), 3228-3242, 2010
Bioactive volatile organic compounds from Antarctic (sponges) bacteria
MC Papaleo, R Romoli, G Bartolucci, I Maida, E Perrin, M Fondi, ...
New biotechnology 30 (6), 824-838, 2013
“Every gene is everywhere but the environment selects”: global geolocalization of gene sharing in environmental samples through network analysis
M Fondi, A Karkman, MV Tamminen, E Bosi, M Virta, R Fani, E Alm, ...
Genome biology and evolution 8 (5), 1388-1400, 2016
Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti
A Checcucci, M Bazzicalupo, A Mengoni, C Viti, L Dziewit, TM Finan, ...
Nature communications 7 (1), 1-10, 2016
Origin and evolution of operons and metabolic pathways
M Fondi, G Emiliani, R Fani
Research in microbiology 160 (7), 502-512, 2009
Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage
M Spagnoletti, D Ceccarelli, A Rieux, M Fondi, E Taviani, R Fani, ...
MBio 5 (4), e01356-14, 2014
Evolution of lactic acid bacteria in the order Lactobacillales as depicted by analysis of glycolysis and pentose phosphate pathways
E Salvetti, M Fondi, R Fani, S Torriani, GE Felis
Systematic and applied microbiology 36 (5), 291-305, 2013
The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case
R Fani, M Brilli, M Fondi, P Liˇ
BMC evolutionary biology 7 (2), 1-17, 2007
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network
M Brilli, A Mengoni, M Fondi, M Bazzicalupo, P Li˛, R Fani
BMC bioinformatics 9 (1), 1-13, 2008
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