Audrey P Gasch
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Genomic expression programs in the response of yeast cells to environmental changes
AP Gasch, PT Spellman, CM Kao, O Carmel-Harel, MB Eisen, G Storz, ...
Molecular biology of the cell 11 (12), 4241-4257, 2000
Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p
AP Gasch, M Huang, S Metzner, D Botstein, SJ Elledge, PO Brown
Molecular biology of the cell 12 (10), 2987-3003, 2001
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
AP Gasch, MB Eisen
Genome biology 3 (11), research0059. 1, 2002
The genomics of yeast responses to environmental stress and starvation
AP Gasch, M Werner-Washburne
Functional & integrative genomics 2 (4-5), 181-192, 2002
Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae
H Yoshimoto, K Saltsman, AP Gasch, HX Li, N Ogawa, D Botstein, ...
Journal of Biological Chemistry 277 (34), 31079-31088, 2002
Rich probabilistic models for gene expression
E Segal, B Taskar, A Gasch, N Friedman, D Koller
Bioinformatics 17 (suppl_1), S243-S252, 2001
Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast
TJ Lyons, AP Gasch, LA Gaither, D Botstein, PO Brown, DJ Eide
Proceedings of the National Academy of Sciences 97 (14), 7957-7962, 2000
Stress-activated genomic expression changes serve a preparative role for impending stress in yeast
DB Berry, AP Gasch
Molecular biology of the cell 19 (11), 4580-4587, 2008
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
MV Lee, SE Topper, SL Hubler, J Hose, CD Wenger, JJ Coon, AP Gasch
Molecular systems biology 7 (1), 514, 2011
Conservation and evolution of cis-regulatory systems in ascomycete fungi
AP Gasch, AM Moses, DY Chiang, HB Fraser, M Berardini, MB Eisen
PLoS Biol 2 (12), e398, 2004
Methionine sulfoxide reductase regulation of yeast lifespan reveals reactive oxygen species-dependent and-independent components of aging
A Koc, AP Gasch, JC Rutherford, HY Kim, VN Gladyshev
Proceedings of the National Academy of Sciences 101 (21), 7999-8004, 2004
Comparative genomics of the environmental stress response in ascomycete fungi
AP Gasch
Yeast 24 (11), 961-976, 2007
Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates
DJ Kvitek, JL Will, AP Gasch
PLoS Genet 4 (10), e1000223, 2008
The environmental stress response: a common yeast response to diverse environmental stresses
AP Gasch
Yeast stress responses, 11-70, 2003
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production
DJ Wohlbach, A Kuo, TK Sato, KM Potts, AA Salamov, KM LaButti, H Sun, ...
Proceedings of the National Academy of Sciences 108 (32), 13212-13217, 2011
Role of thioredoxin reductase in the Yap1p‐dependent response to oxidative stress in Saccharomyces cerevisiae
O Carmel‐Harel, R Stearman, AP Gasch, D Botstein, PO Brown, G Storz
Molecular microbiology 39 (3), 595-605, 2001
SCnorm: robust normalization of single-cell RNA-seq data
R Bacher, LF Chu, N Leng, AP Gasch, JA Thomson, RM Stewart, ...
Nature methods 14 (6), 584, 2017
Multiple means to the same end: the genetic basis of acquired stress resistance in yeast
DB Berry, Q Guan, J Hose, S Haroon, M Gebbia, LE Heisler, C Nislow, ...
PLoS Genet 7 (11), e1002353, 2011
Cellular memory of acquired stress resistance in Saccharomyces cerevisiae
Q Guan, S Haroon, DG Bravo, JL Will, AP Gasch
Genetics 192 (2), 495-505, 2012
An Aspergillus nidulans bZIP response pathway hardwired for defensive secondary metabolism operates through aflR
WB Yin, S Amaike, DJ Wohlbach, AP Gasch, YM Chiang, CCC Wang, ...
Molecular microbiology 83 (5), 1024-1034, 2012
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