Nicholas J Loman
Nicholas J Loman
Professor of Microbial Genomics and Bioinformatics, University of Birmingham
Verified email at bham.ac.uk - Homepage
TitleCited byYear
Performance comparison of benchtop high-throughput sequencing platforms
NJ Loman, RV Misra, TJ Dallman, C Constantinidou, SE Gharbia, J Wain, ...
Nature biotechnology 30 (5), 434, 2012
12862012
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ...
BMC biology 12 (1), 87, 2014
12432014
Real-time, portable genome sequencing for Ebola surveillance
J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ...
Nature 530 (7589), 228, 2016
5952016
Binning metagenomic contigs by coverage and composition
J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
Nature methods 11 (11), 1144, 2014
4932014
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338, 2018
4792018
A complete bacterial genome assembled de novo using only nanopore sequencing data
NJ Loman, J Quick, JT Simpson
Nature methods 12 (8), 733, 2015
4732015
Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4
H Rohde, J Qin, Y Cui, D Li, NJ Loman, M Hentschke, W Chen, F Pu, ...
New England Journal of Medicine 365 (8), 718-724, 2011
4722011
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
NJ Loman, C Constantinidou, JZM Chan, M Halachev, M Sergeant, ...
Nature Reviews Microbiology 10 (9), 599, 2012
4032012
Poretools: a toolkit for analyzing nanopore sequence data
NJ Loman, AR Quinlan
Bioinformatics 30 (23), 3399-3401, 2014
3042014
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406, 2017
2492017
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104: H4
NJ Loman, C Constantinidou, M Christner, H Rohde, JZM Chan, J Quick, ...
Jama 309 (14), 1502-1510, 2013
2262013
Shotgun metagenomics, from sampling to analysis
C Quince, AW Walker, JT Simpson, NJ Loman, N Segata
Nature biotechnology 35 (9), 833, 2017
2222017
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome Biology 16 (1), 114, 2015
1812015
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
J Quick, AR Quinlan, NJ Loman
Gigascience 3 (1), 22, 2014
1722014
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401, 2017
1622017
Twenty years of bacterial genome sequencing
NJ Loman, MJ Pallen
Nature Reviews Microbiology 13 (12), 787-794, 2015
1612015
x BASE2: a comprehensive resource for comparative bacterial genomics
RR Chaudhuri, NJ Loman, LAS Snyder, CM Bailey, DJ Stekel, MJ Pallen
Nucleic acids research 36 (suppl_1), D543-D546, 2007
1612007
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
nature protocols 12 (6), 1261, 2017
1542017
Defining bacterial species in the genomic era: insights from the genus Acinetobacter
JZM Chan, MR Halachev, NJ Loman, C Constantinidou, MJ Pallen
BMC microbiology 12 (1), 302, 2012
1452012
Virus genomes reveal factors that spread and sustained the Ebola epidemic
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309, 2017
1442017
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