Bradley Bernstein
Bradley Bernstein
Professor of Pathology, Harvard University
Verified email at broadinstitute.org
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
92342012
Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome biology 9 (9), R137, 2008
66112008
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ...
Cell 125 (2), 315-326, 2006
47042006
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ...
science 326 (5950), 289-293, 2009
41882009
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448 (7153), 553, 2007
38302007
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223, 2009
33452009
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
M Wernig, A Meissner, R Foreman, T Brambrink, M Ku, K Hochedlinger, ...
Nature 448 (7151), 318, 2007
31052007
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317, 2015
26932015
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
AM Khalil, M Guttman, M Huarte, M Garber, A Raj, DR Morales, K Thomas, ...
Proceedings of the National Academy of Sciences 106 (28), 11667-11672, 2009
24162009
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43, 2011
23272011
Genome-scale DNA methylation maps of pluripotent and differentiated cells
A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna, A Sivachenko, ...
Nature 454 (7205), 766, 2008
23152008
The mammalian epigenome
BE Bernstein, A Meissner, ES Lander
Cell 128 (4), 669-681, 2007
21552007
Active genes are tri-methylated at K4 of histone H3
H Santos-Rosa, R Schneider, AJ Bannister, J Sherriff, BE Bernstein, ...
Nature 419 (6905), 407, 2002
20152002
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
AP Patel, I Tirosh, JJ Trombetta, AK Shalek, SM Gillespie, H Wakimoto, ...
Science 344 (6190), 1396-1401, 2014
16332014
Dissecting direct reprogramming through integrative genomic analysis
TS Mikkelsen, J Hanna, X Zhang, M Ku, M Wernig, P Schorderet, ...
Nature 454 (7200), 49, 2008
15022008
Genomic maps and comparative analysis of histone modifications in human and mouse
BE Bernstein, M Kamal, K Lindblad-Toh, S Bekiranov, DK Bailey, ...
Cell 120 (2), 169-181, 2005
14962005
Initial genome sequencing and analysis of multiple myeloma
MA Chapman, MS Lawrence, JJ Keats, K Cibulskis, C Sougnez, ...
Nature 471 (7339), 467, 2011
12072011
The NIH roadmap epigenomics mapping consortium
BE Bernstein, JA Stamatoyannopoulos, JF Costello, B Ren, ...
Nature biotechnology 28 (10), 1045, 2010
11442010
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
11392012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
10992011
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