Brendan Frey
Brendan Frey
Founder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of Toronto
Verified email at psi.toronto.edu - Homepage
TitleCited byYear
Factor graphs and the sum-product algorithm
FR Kschischang, BJ Frey, HA Loeliger
IEEE Transactions on information theory 47 (2), 498-519, 2001
66542001
Clustering by passing messages between data points
BJ Frey, D Dueck
science 315 (5814), 972-976, 2007
54092007
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe
Nature genetics 40 (12), 1413, 2008
28072008
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning
B Alipanahi, A Delong, MT Weirauch, BJ Frey
Nature biotechnology 33 (8), 831, 2015
10442015
The" wake-sleep" algorithm for unsupervised neural networks
GE Hinton, P Dayan, BJ Frey, RM Neal
Science 268 (5214), 1158-1161, 1995
9901995
Adversarial autoencoders
A Makhzani, J Shlens, N Jaitly, I Goodfellow, B Frey
arXiv preprint arXiv:1511.05644, 2015
9352015
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172, 2013
8072013
Deciphering the splicing code
Y Barash, JA Calarco, W Gao, Q Pan, X Wang, O Shai, BJ Blencowe, ...
Nature 465 (7294), 53, 2010
7952010
Graphical models for machine learning and digital communication
BJ Frey, JF Brendan, BJ Frey
MIT press, 1998
7101998
The human splicing code reveals new insights into the genetic determinants of disease
HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ...
Science 347 (6218), 1254806, 2015
6942015
The evolutionary landscape of alternative splicing in vertebrate species
NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ...
Science 338 (6114), 1587-1593, 2012
6552012
Iterative decoding of compound codes by probability propagation in graphical models
FR Kschischang, BJ Frey
IEEE Journal on Selected Areas in Communications 16 (2), 219-230, 1998
4981998
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
T Kislinger, B Cox, A Kannan, C Chung, P Hu, A Ignatchenko, MS Scott, ...
Cell 125 (1), 173-186, 2006
4892006
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast
AB Parsons, A Lopez, IE Givoni, DE Williams, CA Gray, J Porter, G Chua, ...
Cell 126 (3), 611-625, 2006
4532006
Using expression profiling data to identify human microRNA targets
JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ...
Nature methods 4 (12), 1045, 2007
4132007
A revolution: Belief propagation in graphs with cycles
BJ Frey, DJC MacKay
Advances in neural information processing systems, 479-485, 1998
4071998
The functional landscape of mouse gene expression
W Zhang, QD Morris, R Chang, O Shai, MA Bakowski, N Mitsakakis, ...
Journal of biology 3 (5), 21, 2004
3372004
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
Q Pan, O Shai, C Misquitta, W Zhang, AL Saltzman, N Mohammad, ...
Molecular cell 16 (6), 929-941, 2004
3352004
Widespread intron retention in mammals functionally tunes transcriptomes
U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ...
Genome research 24 (11), 1774-1786, 2014
3242014
Learning flexible sprites in video layers
N Jojic, BJ Frey
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision …, 2001
2992001
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Articles 1–20