Mark Hallen
Mark Hallen
Verified email at duke.edu
Title
Cited by
Cited by
Year
Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env
Y Do Kwon, M Pancera, P Acharya, IS Georgiev, ET Crooks, J Gorman, ...
Nature structural & molecular biology 22 (7), 522, 2015
2272015
Dead‐end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility
MA Hallen, DA Keedy, BR Donald
Proteins: Structure, Function, and Bioinformatics 81 (1), 18-39, 2013
862013
Mass spectrometry-and lysine amidination-based protocol for thermodynamic analysis of protein folding and ligand binding interactions
Y Xu, IN Falk, MA Hallen, MC Fitzgerald
Analytical chemistry 83 (9), 3555-3562, 2011
322011
Fluorescence Recovery Kinetic Analysis of γ-Tubulin Binding to the Mitotic Spindle
MA Hallen, J Ho, CD Yankel, SA Endow
Biophysical Journal 95 (6), 3048-3058, 2008
302008
Ncd motor binding and transport in the spindle
MA Hallen, ZY Liang, SA Endow
Journal of cell science 121 (22), 3834-3841, 2008
242008
Compact representation of continuous energy surfaces for more efficient protein design
MA Hallen, P Gainza, BR Donald
Journal of Chemical Theory and Computation 11 (5), 2292-2306, 2015
222015
A microtubule-destabilizing kinesin motor regulates spindle length and anchoring in oocytes
J Zou, MA Hallen, CD Yankel, SA Endow
The Journal of cell biology 180 (3), 459-466, 2008
202008
comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and …
MA Hallen, BR Donald
Journal of Computational Biology 23 (5), 311-321, 2016
192016
OSPREY 3.0: Open‐source protein redesign for you, with powerful new features
MA Hallen, JW Martin, A Ojewole, JD Jou, AU Lowegard, MS Frenkel, ...
Journal of computational chemistry 39 (30), 2494-2507, 2018
182018
Fast gap‐free enumeration of conformations and sequences for protein design
KE Roberts, P Gainza, MA Hallen, BR Donald
Proteins: Structure, Function, and Bioinformatics 83 (10), 1859-1877, 2015
182015
Computation of steady-state probability distributions in stochastic models of cellular networks
M Hallen, B Li, Y Tanouchi, C Tan, M West, L You
PLoS Comput Biol 7 (10), e1002209, 2011
182011
Two-state displacement by the kinesin-14 Ncd stalk
MA Hallen, ZY Liang, SA Endow
Biophysical chemistry 154 (2-3), 56-65, 2011
172011
Mature Drosophila meiosis I spindles comprise microtubules of mixed polarity
ZY Liang, MA Hallen, SA Endow
Current Biology 19 (2), 163-168, 2009
172009
LUTE (Local unpruned tuple expansion): Accurate continuously flexible protein design with general energy functions and rigid Rotamer-Like efficiency
MA Hallen, JD Jou, BR Donald
Journal of Computational Biology 24 (6), 536-546, 2017
162017
Expanding the scope of quantitative FRAP analysis
MA Hallen, AT Layton
Journal of Theoretical Biology 262 (2), 295-305, 2010
132010
Anastral spindle assembly: a mathematical model
MA Hallen, SA Endow
Biophysical journal 97 (8), 2191-2201, 2009
132009
CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions
MA Hallen, BR Donald
Bioinformatics 33 (14), i5-i12, 2017
112017
Synthesis of carboxylic acid monolayers by ozonolysis of 10-undecenyltrichlorosilane SAMs
MA Hallen, HD Hallen
The Journal of Physical Chemistry C 112 (6), 2086-2090, 2008
112008
Anastral spindle assembly and γ-tubulin in Drosophila oocytes
SA Endow, MA Hallen
BMC cell biology 12 (1), 1, 2011
82011
OSPREY (Open Source Protein Redesign for You) user manual
I Georgiev, KE Roberts, P Gainza, MA Hallen, BR Donald
82009
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