Sergei L Kosakovsky Pond - Google Scholar Citations

Cited by

	All	Since 2015
Citations	19938	11385
h-index	66	47
i10-index	144	123

2300

1150

575

1725

200520062007200820092010201120122013201420152016201720182019202078 206 426 595 666 895 955 1260 1559 1722 1815 1896 2023 2017 2204 1404

Co-authors

Simon DW FrostMicrosoft ResearchVerified email at microsoft.com
Davey SmithProfessor of Medicine, University of California, San DiegoVerified email at ucsd.edu
Konrad SchefflerIlluminaVerified email at illumina.com
Art FY PoonWestern UniversityVerified email at uwo.ca
Joel WertheimUniversity of California, San DiegoVerified email at ucsd.edu
Ben MurrellDepartment of Microbiology, Tumor and Cell Biology, Karolinska InstitutetVerified email at ki.se
Spencer MuseProfessor of Statistics, North Carolina State UniversityVerified email at ncsu.edu
Wayne DelportBioinformatics Scientist, Prognosys BiosciencesVerified email at prognosysbio.com
CHRISTOPHER WOELKMERCK EXPLORATORY SCIENCE CENTERVerified email at merck.com
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Philippe LemeyAssociate Professor, KU LeuvenVerified email at kuleuven.be
David PosadaProfessor of Genetics, University of Vigo, SpainVerified email at uvigo.es
Satish PillaiSenior Investigator, Vitalant Research Institute; Professor, UCSFVerified email at ucsf.edu
Jason A. YoungTech Garden, Inc.Verified email at techgarden.io
Sara Gianella WeibelAssistant Professor of Medicine, University of California San DiegoVerified email at ucsd.edu
Ronald EllisProfessor of Neurosciences, University of California, San DiegoVerified email at ucsd.edu
Gert van ZylDivision of Medical Virology, Stellenbosch University and NHLS TygerbergVerified email at sun.ac.za
Mathieu FourmentUniversity of Technology SydneyVerified email at uts.edu.au
Melissa WardSir Henry Wellcome Fellow: U. Oxford; U. EdinburghVerified email at ed.ac.uk
Erik M VolzImperial College LondonVerified email at imperial.ac.uk

Sergei L Kosakovsky Pond

Professor of Biology, Institute for Genomics and Evolutionary Medicine, Temple University

Verified email at temple.edu - Homepage

Viral evolution phylogenetics evolutionary modeling algorithms


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
HyPhy: hypothesis testing using phylogenies SLK Pond, SV Muse Statistical methods in molecular evolution, 125-181, 2005	2660	2005
Not so different after all: a comparison of methods for detecting amino acid sites under selection SL Kosakovsky Pond, SDW Frost Molecular biology and evolution 22 (5), 1208-1222, 2005	1563	2005
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments SLK Pond, SDW Frost Bioinformatics 21 (10), 2531-2533, 2005	1251	2005
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond Bioinformatics 26 (19), 2455-2457, 2010	1090*	2010
Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, SLK Pond PLoS Genet 8 (7), e1002764, 2012	835	2012
Automated phylogenetic detection of recombination using a genetic algorithm SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Molecular biology and evolution 23 (10), 1891-1901, 2006	775	2006
GARD: a genetic algorithm for recombination detection SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Bioinformatics 22 (24), 3096-3098, 2006	617	2006
FUBAR: a fast, unconstrained bayesian approximation for inferring selection B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ... Molecular biology and evolution 30 (5), 1196-1205, 2013	573	2013
Persistent HIV-1 replication maintains the tissue reservoir during therapy R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, SLK Pond, ... Nature 530 (7588), 51-56, 2016	420	2016
A random effects branch-site model for detecting episodic diversifying selection SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ... Molecular biology and evolution 28 (11), 3033-3043, 2011	385	2011
Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage RA Farrer, LA Weinert, J Bielby, TWJ Garner, F Balloux, F Clare, J Bosch, ... Proceedings of the National Academy of Sciences 108 (46), 18732-18736, 2011	382	2011
Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection SDW Frost, T Wrin, DM Smith, SLK Pond, Y Liu, E Paxinos, C Chappey, ... Proceedings of the National Academy of Sciences 102 (51), 18514-18519, 2005	365	2005
28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007	274	2007
Site-to-site variation of synonymous substitution rates SK Pond, SV Muse Molecular biology and evolution 22 (12), 2375-2385, 2005	256	2005
Adaptation to different human populations by HIV-1 revealed by codon-based analyses SLK Pond, SDW Frost, Z Grossman, MB Gravenor, DD Richman, ... PLoS Comput Biol 2 (6), e62, 2006	239	2006
Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection SJ Little, SDW Frost, JK Wong, DM Smith, SLK Pond, CC Ignacio, ... Journal of virology 82 (11), 5510-5518, 2008	235	2008
A genetic algorithm approach to detecting lineage-specific variation in selection pressure SLK Pond, SDW Frost Molecular biology and evolution 22 (3), 478-485, 2005	212	2005
Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B SDW Frost, Y Liu, SLK Pond, C Chappey, T Wrin, CJ Petropoulos, ... Journal of virology 79 (10), 6523-6527, 2005	194	2005
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015	192	2015
RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015	190	2015

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Upload PDF

Follow this author

Cited by

Co-authors