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| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Nature biotechnology 32 (9), 903-914, 2014 | 843 | 2014 |
| The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ... Nature biotechnology 32 (9), 926-932, 2014 | 513 | 2014 |
| RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus E Davis, F Caiment, X Tordoir, J Cavaillé, A Ferguson-Smith, N Cockett, ... Current Biology 15 (8), 743-749, 2005 | 413 | 2005 |
| DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro M Verheijen, M Lienhard, Y Schrooders, O Clayton, R Nudischer, ... Scientific reports 9 (1), 4641, 2019 | 311 | 2019 |
| High-throughput data integration of RNA–miRNA–circRNA reveals novel insights into mechanisms of benzo [a] pyrene-induced carcinogenicity F Caiment, S Gaj, S Claessen, J Kleinjans Nucleic acids research 43 (5), 2525-2534, 2015 | 140 | 2015 |
| Deep sequencing reveals abundant noncanonical retroviral microRNAs in B-cell leukemia/lymphoma N Rosewick, M Momont, K Durkin, H Takeda, F Caiment, Y Cleuter, ... Proceedings of the National Academy of Sciences 110 (6), 2306-2311, 2013 | 138 | 2013 |
| Application of high-throughput sequencing to circulating microRNAs reveals novel biomarkers for drug-induced liver injury J Krauskopf, F Caiment, SM Claessen, KJ Johnson, RL Warner, ... Toxicological sciences 143 (2), 268-276, 2015 | 100 | 2015 |
| The human circulating miRNome reflects multiple organ disease risks in association with short-term exposure to traffic-related air pollution J Krauskopf, F Caiment, K van Veldhoven, M Chadeau-Hyam, R Sinharay, ... Environment international 113, 26-34, 2018 | 77 | 2018 |
| Polymorphic Polymorphic MicroRNA–Target Interactions: A Novel Source of Phenotypic Variation M Georges, A Clop, F Marcq, H Takeda, D Pirottin, S Hiard, X Tordoir, ... Cold Spring Harbor symposia on quantitative biology 71, 343-350, 2006 | 68 | 2006 |
| Comparing in vitro human liver models to in vivo human liver using RNA-Seq R Gupta, Y Schrooders, D Hauser, M van Herwijnen, W Albrecht, ... Archives of toxicology 95, 573-589, 2021 | 65 | 2021 |
| The callipyge mutation enhances bidirectional long-range DLK1-GTL2 intergenic transcription in cis H Takeda, F Caiment, M Smit, S Hiard, X Tordoir, N Cockett, M Georges, ... Proceedings of the National Academy of Sciences 103 (21), 8119-8124, 2006 | 65 | 2006 |
| Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing F Caiment, C Charlier, T Hadfield, N Cockett, M Georges, D Baurain Genome research 20 (12), 1651-1662, 2010 | 58 | 2010 |
| Progress towards an OECD reporting framework for transcriptomics and metabolomics in regulatory toxicology JA Harrill, MR Viant, CL Yauk, M Sachana, TW Gant, SS Auerbach, ... Regulatory Toxicology and Pharmacology 125, 105020, 2021 | 56 | 2021 |
| The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of … A Smith, J Calley, S Mathur, HR Qian, H Wu, M Farmen, F Caiment, ... BMC genomics 17, 1-19, 2016 | 56 | 2016 |
| Serum microRNA signatures as" liquid biopsies" for interrogating hepatotoxic mechanisms and liver pathogenesis in human J Krauskopf, TM de Kok, SJ Schomaker, M Gosink, DA Burt, P Chandler, ... PLoS One 12 (5), e0177928, 2017 | 54 | 2017 |
| Assessing compound carcinogenicity in vitro using connectivity mapping F Caiment, M Tsamou, D Jennen, J Kleinjans Carcinogenesis 35 (1), 201-207, 2014 | 51 | 2014 |
| Nuclear and mitochondrial DNA methylation patterns induced by valproic acid in human hepatocytes JEJ Wolters, SGJ van Breda, F Caiment, SM Claessen, TMCM de Kok, ... Chemical Research in Toxicology 30 (10), 1847-1854, 2017 | 39 | 2017 |
| diXa: a data infrastructure for chemical safety assessment DM Hendrickx, HJWL Aerts, F Caiment, D Clark, TMD Ebbels, CT Evelo, ... Bioinformatics 31 (9), 1505-1507, 2015 | 38 | 2015 |
| Acrylamide alters CREB and retinoic acid signalling pathways during differentiation of the human neuroblastoma SH-SY5Y cell line K Attoff, Y Johansson, A Cediel-Ulloa, J Lundqvist, R Gupta, F Caiment, ... Scientific Reports 10 (1), 16714, 2020 | 36 | 2020 |
