| Identifying protein complexes in protein–protein interaction networks by using clique seeds and graph entropy B Chen, J Shi, S Zhang, FX Wu Proteomics 13 (2), 269-277, 2013 | 40 | 2013 |
| SVM-RFE based feature selection for tandem mass spectrum quality assessment J Ding, J Shi, FX Wu International journal of data mining and bioinformatics 5 (1), 73-88, 2011 | 34 | 2011 |
| A novel approach to denoising ion trap tandem mass spectra J Ding, J Shi, GG Poirier, FX Wu Proteome Science 7, 1-10, 2009 | 33 | 2009 |
| Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection J Shi, Y Yan, MG Links, L Li, JAR Dillon, M Horsch, A Kusalik BMC bioinformatics 20, 1-14, 2019 | 28 | 2019 |
| Charge state determination of peptide tandem mass spectra using support vector machine (SVM) AM Zou, J Shi, J Ding, FX Wu IEEE Transactions on Information Technology in Biomedicine 14 (3), 552-558, 2010 | 22 | 2010 |
| Protein inference by assembling peptides identified from tandem mass spectra J Shi, FX Wu Current Bioinformatics 4 (3), 226-233, 2009 | 15 | 2009 |
| Features-based deisotoping method for tandem mass spectra Z Yuan, J Shi, W Lin, B Chen, FX Wu Advances in Bioinformatics 2011, 2011 | 14 | 2011 |
| Quality assessment of tandem mass spectra by using a weighted k-means J Ding, J Shi, FX Wu Clinical Proteomics 5, 15-22, 2009 | 12 | 2009 |
| Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation J Shi, FX Wu Proteome science 9, 1-8, 2011 | 11 | 2011 |
| Not AU protein complexes exhibit dense structures in S. cerevisiae PPI network B Chen, J Shi, FX Wu 2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-4, 2012 | 9 | 2012 |
| An adaptive approach to denoising tandem mass spectra W Lin, FX Wu, J Shi, J Ding, W Zhang 2010 IEEE International Conference on Bioinformatics and Biomedicine …, 2010 | 9 | 2010 |
| Unifying protein inference and peptide identification with feedback to update consistency between peptides J Shi, B Chen, FX Wu Proteomics 13 (2), 239-247, 2013 | 8 | 2013 |
| An improved graph entropy-based method for identifying protein complexes B Chen, Y Yan, J Shi, S Zhang, FX Wu 2011 IEEE International Conference on Bioinformatics and Biomedicine, 123-126, 2011 | 8 | 2011 |
| Statistical analysis of Mascot peptide identification with active logistic regression J Shi, W Lin, FX Wu 2010 4th International Conference on Bioinformatics and Biomedical …, 2010 | 7 | 2010 |
| Feature selection for tandem mass spectrum quality assessment J Ding, J Shi, AM Zou, FX Wu 2008 IEEE International Conference on Bioinformatics and Biomedicine, 310-313, 2008 | 7 | 2008 |
| Effects of input data quantity on genome-wide association studies (GWAS) Y Yan, C Burbridge, J Shi, J Liu, A Kusalik International Journal of Data Mining and Bioinformatics 22 (1), 19-43, 2019 | 6 | 2019 |
| Comparing four genome-wide association study (GWAS) programs with varied input data quantity Y Yan, C Burbridge, J Shi, J Liu, A Kusalik 2018 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2018 | 4 | 2018 |
| A feedback framework for protein inference with peptides identified from tandem mass spectra J Shi, FX Wu Proteome Science 10, 1-11, 2012 | 4 | 2012 |
| Protein inference based on peptides identified from tandem mass spectra J Shi University of Saskatchewan, 2012 | 3 | 2012 |
| Improve accuracy of peptide identification with consistency between peptides J Shi, B Chen, FX Wu 2011 IEEE International Conference on Bioinformatics and Biomedicine, 191-196, 2011 | 3 | 2011 |
FangXiang WUUniversity of SaskatchewanVerified email at usask.ca
