Daniel Blankenberg
Daniel Blankenberg
Genomic Medicine Institute - Lerner Research Institute - Cleveland Clinic / Galaxy Project
Verified email at ccf.org - Homepage
Title
Cited by
Cited by
Year
Galaxy: a platform for interactive large-scale genome analysis
B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ...
Genome research 15 (10), 1451-1455, 2005
20932005
Galaxy: a web‐based genome analysis tool for experimentalists
D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ...
Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010
15602010
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ...
Nucleic acids research 44 (W1), W3-W10, 2016
12282016
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
7002018
Manipulation of FASTQ data with Galaxy
D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ...
Bioinformatics 26 (14), 1783-1785, 2010
5462010
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 418, 2012
2772012
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ...
Genome research 17 (12), 1797-1808, 2007
2742007
Cloudmap: a cloud-based pipeline for analysis of mutant genome sequences
G Minevich, DS Park, D Blankenberg, RJ Poole, O Hobert
Genetics 192 (4), 1249-1269, 2012
2132012
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome Biol 15 (2), 403, 2014
1632014
Using galaxy to perform large‐scale interactive data analyses
J Taylor, I Schenck, D Blankenberg, A Nekrutenko
Current protocols in bioinformatics 19 (1), 10.5. 1-10.5. 25, 2007
1492007
A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly
D Blankenberg, J Taylor, I Schenck, J He, Y Zhang, M Ghent, ...
Genome research 17 (6), 960-964, 2007
1492007
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ...
Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014
1412014
Quantitative sequence-function relationships in proteins based on gene ontology
V Sangar, D Blankenberg, N Altman, A Lesk
BMC bioinformatics 8 (1), 294, 2007
702007
Integrating diverse databases into an unified analysis framework: a Galaxy approach
D Blankenberg, N Coraor, G Von Kuster, J Taylor, A Nekrutenko
Database 2011, 2011
512011
Using Galaxy to Perform Large‐Scale Interactive Data Analyses
J Hillman‐Jackson, D Clements, D Blankenberg, J Taylor, A Nekrutenko, ...
Current Protocols in Bioinformatics, 10.5. 1-10.5. 47, 2012
502012
Making whole genome multiple alignments usable for biologists
D Blankenberg, J Taylor, A Nekrutenko, Galaxy Team
Bioinformatics 27 (17), 2426-2428, 2011
472011
Analysis of next-generation sequencing data using Galaxy
D Blankenberg, J Hillman-Jackson
Stem Cell Transcriptional Networks: Methods and Protocols, 21-43, 2014
392014
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
K Qu, S Garamszegi, F Wu, H Thorvaldsdottir, T Liefeld, M Ocana, ...
Nature methods 13 (3), 245, 2016
342016
Wrangling Galaxy’s reference data
D Blankenberg, JE Johnson, Galaxy Team, J Taylor, A Nekrutenko
Bioinformatics 30 (13), 1917-1919, 2014
302014
Child Weight Gain Trajectories Linked To Oral Microbiota Composition
SJC Craig, D Blankenberg, ACL Parodi, IM Paul, LL Birch, JS Savage, ...
Scientific Reports 8 (1), 14030, 2018
142018
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Articles 1–20