| Evolutionary dynamics of Clostridium difficile over short and long time scales M He, M Sebaihia, TD Lawley, RA Stabler, LF Dawson, MJ Martin, KE Holt, ... Proceedings of the National Academy of Sciences 107 (16), 7527-7532, 2010 | 397 | 2010 |
| A new pneumococcal capsule type, 10D, is the 100th serotype and has a large cps fragment from an oral Streptococcus. mBio 11: e00937-20 F Ganaie, JS Saad, L McGee, AJ van Tonder, SD Bentley, SW Lo, ... | 176* | 2020 |
| Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species AP Jackson, A Berry, M Aslett, HC Allison, P Burton, J Vavrova-Anderson, ... Proceedings of the National Academy of Sciences, 2012 | 164 | 2012 |
| Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus … VN Kos, CA Desjardins, A Griggs, G Cerqueira, A Van Tonder, ... MBio 3 (3), e00112-12, 2012 | 158 | 2012 |
| Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole … SW Lo, RA Gladstone, AJ Van Tonder, JA Lees, M Du Plessis, R Benisty, ... The Lancet Infectious Diseases 19 (7), 759-769, 2019 | 146 | 2019 |
| International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact RA Gladstone, SW Lo, JA Lees, NJ Croucher, AJ Van Tonder, J Corander, ... EBioMedicine 43, 338-346, 2019 | 124 | 2019 |
| Genome sequence of Staphylococcus lugdunensis N920143 allows identification of putative colonization and virulence factors S Heilbronner, MTG Holden, A van Tonder, JA Geoghegan, TJ Foster, ... FEMS microbiology letters 322 (1), 60-67, 2011 | 95 | 2011 |
| A Conserved Acetyl Esterase Domain Targets Diverse Bacteriophages to the Vi Capsular Receptor of Salmonella enterica Serovar Typhi D Pickard, AL Toribio, NK Petty, A Van Tonder, L Yu, D Goulding, ... Journal of bacteriology 192 (21), 5746-5754, 2010 | 92 | 2010 |
| Arginine-deprivation–induced oxidative damage sterilizes Mycobacterium tuberculosis S Tiwari, AJ Van Tonder, C Vilchèze, V Mendes, SE Thomas, A Malek, ... Proceedings of the National Academy of Sciences 115 (39), 9779-9784, 2018 | 73 | 2018 |
| SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data L Epping, AJ Van Tonder, RA Gladstone, SD Bentley, AJ Page, JA Keane, ... Microbial genomics 4 (7), 2018 | 68 | 2018 |
| Defining the estimated core genome of bacterial populations using a Bayesian decision model AJ van Tonder, S Mistry, JE Bray, DMC Hill, AJ Cody, CL Farmer, ... PLoS computational biology 10 (8), e1003788, 2014 | 66 | 2014 |
| Genomic analyses of pneumococci reveal a wide diversity of bacteriocins–including pneumocyclicin, a novel circular bacteriocin C Bogaardt, AJ van Tonder, AB Brueggemann BMC genomics 16, 1-16, 2015 | 57 | 2015 |
| Diverse Streptococcus pneumoniae strains drive a MAIT cell response through MR1-dependent and cytokine-driven pathways A Kurioka, B van Wilgenburg, RR Javan, R Hoyle, AJ van Tonder, ... bioRxiv, 158204, 2017 | 53* | 2017 |
| Pneumococcal prophages are diverse, but not without structure or history AB Brueggemann, CL Harrold, R Rezaei Javan, AJ van Tonder, ... Scientific reports 7 (1), 1-13, 2017 | 49 | 2017 |
| Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes AJ van Tonder, JE Bray, SJ Quirk, G Haraldsson, KA Jolley, MCJ Maiden, ... Microbial genomics 2 (10), 2016 | 47 | 2016 |
| Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974 KL Wyres, A van Tonder, LM Lambertsen, R Hakenbeck, J Parkhill, ... BMC genomics 14, 1-8, 2013 | 37 | 2013 |
| Genome sequencing reveals a large and diverse repertoire of antimicrobial peptides R Rezaei Javan, AJ Van Tonder, JP King, CL Harrold, AB Brueggemann Frontiers in Microbiology 9, 2012, 2018 | 32 | 2018 |
| Effect of vaccination on pneumococci isolated from the nasopharynx of healthy children and the middle ear of children with otitis media in Iceland SJ Quirk, G Haraldsson, H Erlendsdóttir, MÁ Hjálmarsdóttir, ... Journal of Clinical Microbiology 56 (12), e01046-18, 2018 | 31 | 2018 |
| Genomics reveals the worldwide distribution of multidrug-resistant serotype 6E pneumococci AJ van Tonder, JE Bray, L Roalfe, R White, M Zancolli, SJ Quirk, ... Journal of Clinical Microbiology 53 (7), 2271-2285, 2015 | 30 | 2015 |
| Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates RA Gladstone, SW Lo, R Goater, C Yeats, B Taylor, J Hadfield, JA Lees, ... Microbial genomics 6 (5), 2020 | 26 | 2020 |
Stephen BentleyWellcome Sanger InstituteVerified email at sanger.ac.uk
