Jennifer Gardy
Jennifer Gardy
Bill & Melinda Gates Foundation
Verified email at - Homepage
Cited by
Cited by
PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
JL Gardy, MR Laird, F Chen, S Rey, CJ Walsh, M Ester, FSL Brinkman
Bioinformatics 21 (5), 617-623, 2005
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
JL Gardy, JC Johnston, SJH Sui, VJ Cook, L Shah, E Brodkin, S Rempel, ...
New England Journal of Medicine 364 (8), 730-739, 2011
Towards a genomics-informed, real-time, global pathogen surveillance system
JL Gardy, NJ Loman
Nature Reviews Genetics 19 (1), 9-20, 2018
PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria
JL Gardy, C Spencer, K Wang, M Ester, GE Tusnady, I Simon, S Hua, ...
Nucleic acids research 31 (13), 3613-3617, 2003
Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
CB Ford, RR Shah, MK Maeda, S Gagneux, MB Murray, T Cohen, ...
Nature genetics 45 (7), 784-790, 2013
Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis
MR Farhat, BJ Shapiro, KJ Kieser, R Sultana, KR Jacobson, TC Victor, ...
Nature genetics 45 (10), 1183-1189, 2013
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 218, 2008
Rapid, comprehensive, and affordable mycobacterial diagnosis with whole genome sequencing: a prospective study
CDW Pankhurst LJ, del Ojo Elias C, Votintseva AA, Walker TM, Cole K, Davies ...
Lancet Respiratory Medicine, 2015
The Commensal Streptococcus salivarius K12 Downregulates the Innate Immune Responses of Human Epithelial Cells and Promotes Host-Microbe Homeostasis
C Cosseau, DA Devine, E Dullaghan, JL Gardy, A Chikatamarla, ...
Infection and immunity 76 (9), 4163-4175, 2008
Association between the 2008–09 seasonal influenza vaccine and pandemic H1N1 illness during spring–summer 2009: four observational studies from Canada
DM Skowronski, G De Serres, NS Crowcroft, NZ Janjua, N Boulianne, ...
PLoS Med 7 (4), e1000258, 2010
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, ...
NATURE reviews microbiology 17 (9), 533-545, 2019
Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing
CRyPTIC Consortium and the 100,000 Genomes Project
New England Journal of Medicine 379 (15), 1403-1415, 2018
Metagenomics for pathogen detection in public health
RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang
Genome medicine 5, 1-14, 2013
Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks
X Didelot, C Fraser, J Gardy, C Colijn
Molecular biology and evolution 34 (4), 997-1007, 2017
Methods for predicting bacterial protein subcellular localization
JL Gardy, FSL Brinkman
Nature Reviews Microbiology 4 (1), 741-751, 2006
Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data
X Didelot, J Gardy, C Colijn
Molecular Biology and Evolution, doi: 10.1093/molbev/msu12, 2014
Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation
A Barsky, JL Gardy, REW Hancock, T Munzner
Bioinformatics 23 (8), 1040-1042, 2007
Intracellular receptor for human host defense peptide LL-37 in monocytes
N Mookherjee, DND Lippert, P Hamill, R Falsafi, A Nijnik, J Kindrachuk, ...
The Journal of Immunology 183 (4), 2688-2696, 2009
PSORTdb: a protein subcellular localization database for bacteria
S Rey, M Acab, JL Gardy, MR Laird, K DeFays, C Lambert, FSL Brinkman
Nucleic acids research 33 (suppl_1), D164-D168, 2005
Enabling a systems biology approach to immunology: focus on innate immunity
JL Gardy, DJ Lynn, FSL Brinkman, REW Hancock
Trends in immunology 30 (6), 249-262, 2009
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