| Bloom: A 176b-parameter open-access multilingual language model T Le Scao, A Fan, C Akiki, E Pavlick, S Ilić, D Hesslow, R Castagné, ... | 1628 | 2023 |
| Declutr: Deep contrastive learning for unsupervised textual representations J Giorgi, O Nitski, B Wang, G Bader arXiv preprint arXiv:2006.03659, 2020 | 544 | 2020 |
| High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis ECH Chen, E Morin, D Beaudet, J Noel, G Yildirir, S Ndikumana, ... New Phytologist 220 (4), 1161-1171, 2018 | 220 | 2018 |
| Transfer learning for biomedical named entity recognition with neural networks. JM Giorgi, G Bader bioRxiv, 262790, 2018 | 195 | 2018 |
| Towards reliable named entity recognition in the biomedical domain JM Giorgi, GD Bader Bioinformatics 36 (1), 280-286, 2020 | 96 | 2020 |
| End-to-end named entity recognition and relation extraction using pre-trained language models J Giorgi, X Wang, N Sahar, WY Shin, GD Bader, B Wang arXiv preprint arXiv:1912.13415, 2019 | 58 | 2019 |
| A sequence-to-sequence approach for document-level relation extraction J Giorgi, GD Bader, B Wang arXiv preprint arXiv:2204.01098, 2022 | 55 | 2022 |
| Bigbio: A framework for data-centric biomedical natural language processing J Fries, L Weber, N Seelam, G Altay, D Datta, S Garda, S Kang, R Su, ... Advances in Neural Information Processing Systems 35, 25792-25806, 2022 | 48 | 2022 |
| Wanglab at mediqa-chat 2023: Clinical note generation from doctor-patient conversations using large language models J Giorgi, A Toma, R Xie, SS Chen, KR An, GX Zheng, B Wang arXiv preprint arXiv:2305.02220, 2023 | 31* | 2023 |
| Science Forum: Author-sourced capture of pathway knowledge in computable form using Biofactoid JV Wong, M Franz, MC Siper, D Fong, F Durupinar, C Dallago, A Luna, ... Elife 10, e68292, 2021 | 17 | 2021 |
| Open domain multi-document summarization: A comprehensive study of model brittleness under retrieval J Giorgi, L Soldaini, B Wang, G Bader, K Lo, LL Wang, A Cohan arXiv preprint arXiv:2212.10526, 2022 | 10 | 2022 |
| Large language models are fixated by red herrings: Exploring creative problem solving and einstellung effect using the only connect wall dataset S Naeini, R Saqur, M Saeidi, J Giorgi, B Taati arXiv preprint arXiv:2306.11167, 2023 | 7 | 2023 |
| Kr üger ECH Chen, E Morin, D Beaudet, J Noel, G Yildirir, S Ndikumana, ... M., Marton, T., Ropars, J., Grigoriev, IV, Hainaut, M., Henrissat, B., Roux …, 2018 | 5 | 2018 |
| TOPICAL: TOPIC Pages AutomagicaLly J Giorgi, A Singh, D Downey, S Feldman, LL Wang arXiv preprint arXiv:2405.01796, 2024 | 2 | 2024 |
| A flexible search system for high-accuracy identification of biological entities and molecules M Franz, JV Wong, MC Siper, C Dallago, J Giorgi, E Demir, C Sander, ... Journal of Open Source Software 6 (67), 3756, 2021 | 1 | 2021 |
| Capturing scientific knowledge in computable form JV Wong, M Franz, MC Siper, D Fong, F Durupinar, C Dallago, A Luna, ... bioRxiv, 2021.03. 10.382333, 2021 | 1 | 2021 |
| Large Language Models are Fixated by Red Herrings: Exploring Creative Problem Solving and Einstellung Effect using the Only Connect Wall Dataset S Alavi Naeini, R Saqur, M Saeidi, J Giorgi, B Taati Advances in Neural Information Processing Systems 36, 2024 | | 2024 |
| A study on the application of natural language processing methods to scientific text J Giorgi University of Toronto (Canada), 2024 | | 2024 |
| CiteNet: A Search and Visualization Tool for Scientific Literature DT Forster, JM Giorgi | | |
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
