Xin Chen
Cited by
Cited by
The similarity metric
M Li, X Chen, X Li, B Ma, PMB Vitányi
IEEE transactions on Information Theory 50 (12), 3250-3264, 2004
An information-based sequence distance and its application to whole mitochondrial genome phylogeny
M Li, JH Badger, X Chen, S Kwong, P Kearney, H Zhang
Bioinformatics 17 (2), 149-154, 2001
A compression algorithm for DNA sequences and its applications in genome comparison
X Chen, S Kwong, M Li
Genome informatics 10, 51-61, 1999
Shared information and program plagiarism detection
X Chen, B Francia, M Li, B Mckinnon, A Seker
IEEE Transactions on Information Theory 50 (7), 1545-1551, 2004
DNACompress: fast and effective DNA sequence compression
X Chen, M Li, B Ma, J Tromp
Bioinformatics 18 (12), 1696-1698, 2002
Assignment of orthologous genes via genome rearrangement
X Chen, J Zheng, Z Fu, P Nan, Y Zhong, S Lonardi, T Jiang
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 302-315, 2005
A compression algorithm for DNA sequences
X Chen, S Kwong, M Li
IEEE Engineering in Medicine and biology Magazine 20 (4), 61-66, 2001
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
JY Yang, ZL Peng, X Chen
BMC bioinformatics 11 (1), 1-10, 2010
MSOAR: a high-throughput ortholog assignment system based on genome rearrangement
Z Fu, X Chen, V Vacic, P Nan, Y Zhong, T Jiang
Journal of Computational Biology 14 (9), 1160-1175, 2007
Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome
X Chen, Z Su, P Dam, B Palenik, Y Xu, T Jiang
Nucleic acids research 32 (7), 2147-2157, 2004
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
NH Tran, R Qiao, L Xin, X Chen, C Liu, X Zhang, B Shan, A Ghodsi, M Li
Nature methods 16 (1), 63-66, 2019
Improving taxonomy‐based protein fold recognition by using global and local features
JY Yang, X Chen
Proteins: Structure, Function, and Bioinformatics 79 (7), 2053-2064, 2011
Computing the assignment of orthologous genes via genome rearrangement
X Chen, J Zheng, Z Fu, P Nan, Y Zhong, S Lonardi, T Jiang
Proceedings of the 3rd Asia-Pacific Bioinformatics Conference, 363-378, 2005
An improved classification of G-protein-coupled receptors using sequence-derived features
ZL Peng, JY Yang, X Chen
BMC bioinformatics 11 (1), 1-13, 2010
W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data
X Chen, L Guo, Z Fan, T Jiang
Bioinformatics 24 (9), 1121-1128, 2008
Computational prediction of operons in Synechococcus sp. WH8102
X Chen, Z Su, Y Xu, T Jiang
Genome Informatics 15 (2), 211-222, 2004
A new compression scheme for color-quantized images
X Chen, S Kwong, J Feng
IEEE transactions on circuits and systems for video technology 12 (10), 904-908, 2002
On sorting unsigned permutations by double-cut-and-joins
X Chen
Journal of Combinatorial Optimization 25 (3), 339-351, 2013
Computational Inference of Regulatory Pathways in Microbes An Application to Phosphorus Assimilation Pathways in Synechococcus sp. WH8102
Z Su, P Dam, X Chen, V Olman, T Jiang, B Palenik, Y Xu
Genome Informatics 14, 3-13, 2003
A theory of uncheatable program plagiarism detection and its practical implementation
X Chen, M Li, B Mckinnon, A Seker
SID website at http://dna. cs. ucsb. edu/SID, 2002
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