Jian Yang

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Xianwen RenChangping LaboratoryVerified email at pku.edu.cn
Zhaohui XiongCoriell Institute for Medical ResearchVerified email at coriell.org
Yongliang YanAssociative Professor of Biotechnology Research Institute, Chinese Academy of Agricultural SciencesVerified email at caas.cn
Lingling WangThe Ohio State UniversityVerified email at osu.edu
Wei LiProfessor of Bioinformatics, University of California Irvine; Baylor College of MedicineVerified email at uci.edu
Zhenyu XuanUniversity of Texas at DallasVerified email at utdallas.edu
Jinhua WangProfessor, Masonic Cancer Center, Institute for Health Informatics, University of MinnesotaVerified email at umn.edu

Jian Yang

Institute of Pathogen Biology, Chinese Academy of Medical Sciences (CAMS&PUMC)

Verified email at ipbcams.ac.cn - Homepage

Comparative Genomics Bioinformatics Bacterial Genomics Bacterial virulence factors Metagenomics


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VFDB: a reference database for bacterial virulence factors L Chen, J Yang, J Yu, Z Yao, L Sun, Y Shen, Q Jin Nucleic acids research 33 (suppl 1), D325-D328, 2005	1546	2005
VFDB 2019: a comparative pathogenomic platform with an interactive web interface B Liu, D Zheng, Q Jin, L Chen, J Yang Nucleic acids research 47 (D1), D687-D692, 2019	1338	2019
VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on L Chen, D Zheng, B Liu, J Yang, Q Jin Nucleic acids research 44 (D1), D694-D697, 2016	1186	2016
Heightened innate immune responses in the respiratory tract of COVID-19 patients Z Zhou, L Ren, L Zhang, J Zhong, Y Xiao, Z Jia, L Guo, J Yang, C Wang, ... Cell host & microbe 27 (6), 883-890. e2, 2020	935	2020
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157 Q Jin, Z Yuan, J Xu, Y Wang, Y Shen, W Lu, J Wang, H Liu, J Yang, ... Nucleic acids research 30 (20), 4432-4441, 2002	579	2002
Genome‐based analysis of virulence genes in a non‐biofilm‐forming Staphylococcus epidermidis strain (ATCC 12228) YQ Zhang, SX Ren, HL Li, YX Wang, G Fu, J Yang, ZQ Qin, YG Miao, ... Molecular microbiology 49 (6), 1577-1593, 2003	570	2003
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors L Chen, Z Xiong, L Sun, J Yang, Q Jin Nucleic Acids Research, 2011	560	2011
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery F Yang, J Yang, X Zhang, L Chen, Y Jiang, Y Yan, X Tang, J Wang, ... Nucleic acids research 33 (19), 6445-6458, 2005	494	2005
VFDB 2022: a general classification scheme for bacterial virulence factors B Liu, D Zheng, S Zhou, L Chen, J Yang Nucleic acids research 50 (D1), D912-D917, 2022	459	2022
Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501 Y Yan, J Yang, Y Dou, M Chen, S Ping, J Peng, W Lu, W Zhang, Z Yao, ... Proceedings of the National Academy of Sciences 105 (21), 7564-7569, 2008	432	2008
Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces Z Wu, X Ren, L Yang, Y Hu, J Yang, G He, J Zhang, J Dong, L Sun, J Du, ... Journal of Virology 86 (20), 10999-11012, 2012	337	2012
Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases Z Wu, LI Yang, X Ren, G He, J Zhang, J Yang, Z Qian, J Dong, L Sun, ... The ISME journal 10 (3), 609-620, 2016	330	2016
A complete sequence of the T. tengcongensis genome Q Bao, Y Tian, W Li, Z Xu, Z Xuan, S Hu, W Dong, J Yang, Y Chen, Y Xue, ... Genome research 12 (5), 689-700, 2002	284	2002
A Pseudomonas aeruginosa type VI secretion phospholipase D effector targets both prokaryotic and eukaryotic cells F Jiang, NR Waterfield, J Yang, G Yang, Q Jin Cell host & microbe 15 (5), 600-610, 2014	268	2014
Cold-chain food contamination as the possible origin of COVID-19 resurgence in Beijing X Pang, L Ren, S Wu, W Ma, J Yang, L Di, J Li, Y Xiao, L Kang, S Du, J Du, ... National Science Review 7 (12), 1861-1864, 2020	209	2020
Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach J Yang, F Yang, L Ren, Z Xiong, Z Wu, J Dong, L Sun, T Zhang, Y Hu, ... Journal of clinical microbiology 49 (10), 3463-3469, 2011	204	2011
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics J Yang, L Chen, L Sun, J Yu, Q Jin Nucleic acids research 36 (suppl 1), D539-D542, 2008	187	2008
DBatVir: The database of bat-associated viruses L Chen, B Liu, J Yang, Q Jin Database 2014, bau021, 2014	178	2014
Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases Z Wu, L Lu, J Du, L Yang, X Ren, B Liu, J Jiang, J Yang, J Dong, L Sun, ... Microbiome 6 (1), 178, 2018	171	2018
Clinically prevalent mutations in Mycobacterium tuberculosis alter propionate metabolism and mediate multidrug tolerance ND Hicks, J Yang, X Zhang, B Zhao, YH Grad, L Liu, X Ou, Z Chang, H Xia, ... Nature microbiology 3 (9), 1032-1042, 2018	151	2018

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