Andrey Tovchigrechko
Andrey Tovchigrechko
Principal Scientist, Bioinformatics, Kite Pharma
Verified email at kitepharma.com
Title
Cited by
Cited by
Year
GRAMM-X public web server for protein–protein docking
A Tovchigrechko, IA Vakser
Nucleic acids research 34 (suppl_2), W310-W314, 2006
6802006
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ...
Nature 468 (7320), 60-66, 2010
2712010
Development and testing of an automated approach to protein docking
A Tovchigrechko, IA Vakser
Proteins: Structure, Function, and Bioinformatics 60 (2), 296-301, 2005
1732005
Functional tradeoffs underpin salinity-driven divergence in microbial community composition
CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ...
PloS one 9 (2), e89549, 2014
1452014
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1222016
Docking of protein models
A Tovchigrechko, CA Wells, IA Vakser
Protein Science 11 (8), 1888-1896, 2002
1172002
Metagenomic exploration of viruses throughout the Indian Ocean
SJ Williamson, LZ Allen, HA Lorenzi, DW Fadrosh, D Brami, ...
Public Library of Science 7 (10), e42047, 2012
1072012
Dockground resource for studying protein–protein interfaces
D Douguet, HC Chen, A Tovchigrechko, IA Vakser
Bioinformatics 22 (21), 2612-2618, 2006
992006
How common is the funnel‐like energy landscape in protein‐protein interactions?
A Tovchigrechko, IA Vakser
Protein science 10 (8), 1572-1583, 2001
992001
RsfA (YbeB) proteins are conserved ribosomal silencing factors
R Häuser, M Pech, J Kijek, H Yamamoto, B Titz, F Naeve, ...
PLoS genetics 8 (7), e1002815, 2012
842012
DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking
Y Gao, D Douguet, A Tovchigrechko, IA Vakser
Proteins: Structure, Function, and Bioinformatics 69 (4), 845-851, 2007
802007
Differences in the nasopharyngeal microbiome during acute respiratory tract infection with human rhinovirus and respiratory syncytial virus in infancy
C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, ...
The Journal of infectious diseases 214 (12), 1924-1928, 2016
622016
Parallelizing BLAST and SOM algorithms with MapReduce-MPI library
SJ Sul, A Tovchigrechko
2011 IEEE International Symposium on Parallel and Distributed Processing …, 2011
612011
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis
SV Rajagopala, S Yooseph, DM Harkins, KJ Moncera, KB Zabokrtsky, ...
BMC genomics 17 (1), 1-10, 2016
562016
Nasopharyngeal microbiome in respiratory syncytial virus resembles profile associated with increased childhood asthma risk
C Rosas-Salazar, MH Shilts, A Tovchigrechko, JD Chappell, EK Larkin, ...
American journal of respiratory and critical care medicine 193 (10), 1180-1183, 2016
452016
Minimally invasive sampling method identifies differences in taxonomic richness of nasal microbiomes in young infants associated with mode of delivery
MH Shilts, C Rosas-Salazar, A Tovchigrechko, EK Larkin, M Torralba, ...
Microbial ecology 71 (1), 233-242, 2016
432016
Comparative study of urea and tetramethylurea in water by molecular dynamics simulations
A Tovchigrechko, M Rodnikova, J Barthel
Journal of molecular liquids 79 (3), 187-201, 1999
391999
S. aureus evades macrophage killing through NLRP3-dependent effects on mitochondrial trafficking
TS Cohen, ML Boland, BB Boland, V Takahashi, A Tovchigrechko, Y Lee, ...
Cell reports 22 (9), 2431-2441, 2018
382018
Studying protein complexes by the yeast two-hybrid system
SV Rajagopala, P Sikorski, JH Caufield, A Tovchigrechko, P Uetz
Methods 58 (4), 392-399, 2012
362012
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy
C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, ...
Journal of Allergy and Clinical Immunology 142 (5), 1447-1456. e9, 2018
352018
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