Faraz Hach
Title
Cited by
Cited by
Year
Spatial genomic heterogeneity within localized, multifocal prostate cancer
PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ...
Nature genetics 47 (7), 736-745, 2015
3342015
mrsFAST: a cache-oblivious algorithm for short-read mapping
F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ...
Nature methods 7 (8), 576-577, 2010
2982010
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
2502020
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ...
Bioinformatics 26 (12), i350-i357, 2010
2492010
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer
AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ...
The Journal of Pathology 227 (3), 286-297, 2012
1602012
SCALCE: boosting Sequence Compression Algorithms using Locally Consistent Encoding
F Hach, I Numanagić, C Alkan, SC Sahinalp
Bioinformatics 28 (23), 3051-3057., 2012
1442012
Alu repeat discovery and characterization within human genomes
F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ...
Genome Research 21 (6), 840-849, 2011
1062011
Comparison of high-throughput sequencing data compression tools
I Numanagić, JK Bonfield, F Hach, J Voges, J Ostermann, C Alberti, ...
nature methods 13 (12), 1005-1008, 2016
852016
Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer
C Wu, AW Wyatt, AV Lapuk, A McPherson, BJ McConeghy, RH Bell, ...
The Journal of pathology 227 (1), 53-61, 2012
642012
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications
F Hach, I Sarrafi, F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp
Nucleic acids research 42 (W1), W494-W500, 2014
572014
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data
A McPherson, C Wu, I Hajirasouliha, F Hormozdiari, F Hach, A Lapuk, ...
Bioinformatics 27 (11), 1481-1488, 2011
542011
Cliiq: Accurate comparative detection and quantification of expressed isoforms in a population
YY Lin, P Dao, F Hach, M Bakhshi, F Mo, A Lapuk, C Collins, SC Sahinalp
International Workshop on Algorithms in Bioinformatics, 178-189, 2012
452012
DeeZ: reference-based compression by local assembly
F Hach, I Numanagic, SC Sahinalp
Nature methods 11 (11), 1082-1084, 2014
422014
Colormap: Correcting long reads by mapping short reads
E Haghshenas, F Hach, SC Sahinalp, C Chauve
Bioinformatics 32 (17), i545-i551, 2016
412016
Model expansion as a framework for modelling and solving search problems
D Mitchell, E Ternovska, F Hach, R Mohebali
Technical Report TR 2006-24, School of Computing Science, Simon Fraser …, 2006
402006
SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA
C Kockan, F Hach, I Sarrafi, RH Bell, B McConeghy, K Beja, A Haegert, ...
Bioinformatics 33 (1), 26-34, 2017
352017
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ...
Genome research 29 (11), 1860-1877, 2019
342019
BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma
R Shrestha, N Nabavi, YY Lin, F Mo, S Anderson, S Volik, HH Adomat, ...
Genome medicine 11 (1), 1-12, 2019
312019
Sensitive and fast mapping of di-base encoded reads
F Hormozdiari, F Hach, SC Sahinalp, EE Eichler, C Alkan
Bioinformatics 27 (14), 1915-1921, 2011
312011
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection
AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ...
Genome biology 19 (1), 188, 2018
272018
The system can't perform the operation now. Try again later.
Articles 1–20