|Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing|
RD Morin, M Bainbridge, A Fejes, M Hirst, M Krzywinski, TJ Pugh, ...
Biotechniques 45 (1), 81-94, 2008
|Recurrent somatic DICER1 mutations in nonepithelial ovarian cancers|
A Heravi-Moussavi, MS Anglesio, SWG Cheng, J Senz, W Yang, ...
New England Journal of Medicine 366 (3), 234-242, 2012
|FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology|
AP Fejes, G Robertson, M Bilenky, R Varhol, M Bainbridge, SJM Jones
Bioinformatics 24 (15), 1729-1730, 2008
|Genome-wide relationship between histone H3 lysine 4 mono-and tri-methylation and transcription factor binding|
AG Robertson, M Bilenky, A Tam, Y Zhao, T Zeng, N Thiessen, T Cezard, ...
Genome research 18 (12), 1906-1917, 2008
|Mutations in EZH2 cause Weaver syndrome|
WT Gibson, RL Hood, SH Zhan, DE Bulman, AP Fejes, R Moore, ...
The American Journal of Human Genetics 90 (1), 110-118, 2012
|A new algorithm for RNA secondary structure design|
M Andronescu, AP Fejes, F Hutter, HH Hoos, A Condon
Journal of molecular biology 336 (3), 607-624, 2004
|Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors|
SJM Jones, J Laskin, YY Li, OL Griffith, J An, M Bilenky, YS Butterfield, ...
Genome biology 11 (8), R82, 2010
|Recurrent targets of aberrant somatic hypermutation in lymphoma|
AH Khodabakhshi, RD Morin, AP Fejes, AJ Mungall, KL Mungall, ...
Oncotarget 3 (11), 1308, 2012
|De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis|
V Boeva, D Surdez, N Guillon, F Tirode, AP Fejes, O Delattre, E Barillot
Nucleic acids research 38 (11), e126-e126, 2010
|GPSM2 mutations cause the brain malformations and hearing loss in Chudley-McCullough syndrome|
D Doherty, AE Chudley, G Coghlan, GE Ishak, AM Innes, EG Lemire, ...
The American Journal of Human Genetics 90 (6), 1088-1093, 2012
|DNA methylation, genotype and gene expression: who is driving and who is along for the ride?|
MJ Jones, AP Fejes, MS Kobor
Genome biology 14 (7), 126, 2013
|Gene expression profiling of oxidative stress response of C. elegans aging defective AMPK mutants using massively parallel transcriptome sequencing|
H Shin, H Lee, AP Fejes, DL Baillie, HS Koo, SJM Jones
BMC research notes 4 (1), 34, 2011
|System and method for simulating the time-dependent behaviour of atomic and/or molecular systems subject to static or dynamic fields|
AP Fejes, JS Vieceli, S Rahnama, G Swaminathan
US Patent App. 11/581,075, 2008
|System and method for modeling interactions|
AP Fejes, G Swaminathan, JS Vieceli
US Patent 7,769,573, 2010
|Shotgun proteomic analysis of a chromatophore-enriched preparation from the purple phototrophic bacterium Rhodopseudomonas palustris|
AP Fejes, CY Eugene, DR Goodlett, JT Beatty
Photosynthesis research 78 (3), 195-203, 2003
|Human variation database: an open-source database template for genomic discovery|
AP Fejes, AH Khodabakhshi, I Birol, SJM Jones
Bioinformatics 27 (8), 1155-1156, 2011
|DaVIE: database for the visualization and integration of epigenetic data|
AP Fejes, MJ Jones, MS Kobor
Frontiers in genetics 5, 325, 2014
|The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool|
S Flygare, EJ Hernandez, L Phan, B Moore, M Li, A Fejes, H Hu, K Eilbeck, ...
BMC bioinformatics 19 (1), 57, 2018
|Drug Discovery in the bioinformatics Age|
G Duggan, A Fejes, C Ingram, M Salazar, M Sirski
|Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline|
AH Khodabakhshi, AP Fejes, I Birol, SJM Jones
BMC bioinformatics 14 (1), 167, 2013