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Daofeng Li
Daofeng Li
Verified email at genetics.wustl.edu
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Cited by
Year
Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
5947*2015
The 4D nucleome project
J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis, S Lomvardas, ...
Nature 549 (7671), 219-226, 2017
6322017
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Y Wang, F Song, B Zhang, L Zhang, J Xu, D Kuang, D Li, MNK Choudhary, ...
Genome biology 19 (1), 1-12, 2018
4982018
Widespread contribution of transposable elements to the innovation of gene regulatory networks
V Sundaram, Y Cheng, Z Ma, D Li, X Xing, P Edge, MP Snyder, T Wang
Genome research 24 (12), 1963-1976, 2014
4602014
PMRD: plant microRNA database
Z Zhang, J Yu, D Li, Z Zhang, F Liu, X Zhou, T Wang, Y Ling, Z Su
Nucleic Acids Research 38 (suppl 1), D806, 2010
4322010
The human epigenome browser at washington university
X Zhou, B Maricque, M Xie, D Li, V Sundaram, EA Martin, BC Koebbe, ...
Nature Methods 8 (12), 989-990, 2011
3402011
Transposable elements drive widespread expression of oncogenes in human cancers
HS Jang, NM Shah, AY Du, ZZ Dailey, EC Pehrsson, PM Godoy, D Zhang, ...
Nature genetics 51 (4), 611-617, 2019
2812019
DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats
D Brocks, CR Schmidt, M Daskalakis, HS Jang, NM Shah, D Li, J Li, ...
Nature genetics 49 (7), 1052-1060, 2017
2702017
WashU epigenome browser update 2019
D Li, S Hsu, D Purushotham, RL Sears, T Wang
Nucleic acids research 47 (W1), W158-W165, 2019
2402019
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
M Xie, C Hong, B Zhang, RF Lowdon, X Xing, D Li, X Zhou, HJ Lee, ...
Nature genetics 45 (7), 836-841, 2013
2402013
The Human Pangenome Project: a global resource to map genomic diversity
T Wang, L Antonacci-Fulton, K Howe, HA Lawson, JK Lucas, AM Phillippy, ...
Nature 604 (7906), 437-446, 2022
2382022
Exploring long-range genome interactions using the WashU Epigenome Browser
X Zhou, RF Lowdon, D Li, HA Lawson, PAF Madden, JF Costello, T Wang
Nature methods 10 (5), 375-376, 2013
2192013
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong, RP Nagarajan, JB Cheng, ...
Genome research 23 (9), 1522-1540, 2013
2102013
Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
M Stevens, JB Cheng, D Li, M Xie, C Hong, CL Maire, KL Ligon, M Hirst, ...
Genome research 23 (9), 1541-1553, 2013
1782013
Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses
D Li, Y Zhang, X Hu, X Shen, L Ma, Z Su, T Wang, J Dong
BMC Plant Biology 11 (1), 1-19, 2011
1372011
Maternal high-fat diet associated with altered gene expression, DNA methylation, and obesity risk in mouse offspring
MR Keleher, R Zaidi, S Shah, ME Oakley, C Pavlatos, S El Idrissi, X Xing, ...
PloS one 13 (2), e0192606, 2018
1262018
Induction of hematopoietic and endothelial cell program orchestrated by ETS transcription factor ER71/ETV2
F Liu, D Li, YYL Yu, I Kang, MJ Cha, JY Kim, C Park, DK Watson, T Wang, ...
EMBO reports 16 (5), 654-669, 2015
1242015
MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts
DG Abernathy, WK Kim, MJ McCoy, AM Lake, R Ouwenga, SW Lee, ...
Cell Stem Cell 21 (3), 332-348. e9, 2017
1232017
Intermediate DNA methylation is a conserved signature of genome regulation
GN Elliott, C Hong, X Xing, X Zhou, D Li, C Coarfa, RJA Bell, CL Maire, ...
Nature communications 6 (1), 6363, 2015
1142015
Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation
D Li, B Zhang, X Xing, T Wang
Methods 72, 29-40, 2015
1142015
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