Daniel Marbach
Daniel Marbach
Roche Pharma Research and Early Development, Basel, Switzerland
Verified email at roche.com - Homepage
TitleCited byYear
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796, 2012
10342012
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
7542010
Revealing strengths and weaknesses of methods for gene network inference
D Marbach, RJ Prill, T Schaffter, C Mattiussi, D Floreano, G Stolovitzky
Proceedings of the national academy of sciences 107 (14), 6286-6291, 2010
6482010
Towards a rigorous assessment of systems biology models: the DREAM3 challenges
RJ Prill, D Marbach, J Saez-Rodriguez, PK Sorger, LG Alexopoulos, ...
PloS one 5 (2), e9202, 2010
3792010
Generating realistic in silico gene networks for performance assessment of reverse engineering methods
D Marbach, T Schaffter, C Mattiussi, D Floreano
Journal of computational biology 16 (2), 229-239, 2009
3752009
GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods
T Schaffter, D Marbach, D Floreano
Bioinformatics 27 (16), 2263-2270, 2011
3652011
Network deconvolution as a general method to distinguish direct dependencies in networks
S Feizi, D Marbach, M Médard, M Kellis
Nature biotechnology 31 (8), 726, 2013
2022013
Fast and rigorous computation of gene and pathway scores from SNP-based summary statistics
D Lamparter, D Marbach, R Rueedi, Z Kutalik, S Bergmann
PLoS computational biology 12 (1), e1004714, 2016
1382016
Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases
D Marbach, D Lamparter, G Quon, M Kellis, Z Kutalik, S Bergmann
Nature methods 13 (4), 366, 2016
1272016
Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
D Marbach, S Roy, F Ay, PE Meyer, R Candeias, T Kahveci, CA Bristow, ...
Genome research 22 (7), 1334-1349, 2012
932012
Online optimization of modular robot locomotion
D Marbach, AJ Ijspeert
IEEE International Conference Mechatronics and Automation, 2005 1, 248-253, 2005
872005
Verification of systems biology research in the age of collaborative competition
P Meyer, LG Alexopoulos, T Bonk, A Califano, CR Cho, A De La Fuente, ...
Nature biotechnology 29 (9), 811, 2011
842011
Co-evolution of configuration and control for homogenous modular robots
D Marbach, AJ Ijspeert
Proceedings of the eighth conference on intelligent autonomous systems (IAS8 …, 2004
652004
Information-Theoretic Inference of Gene Networks Using Backward Elimination.
P Meyer, D Marbach, S Roy, M Kellis
BioComp, 700-705, 2010
492010
Replaying the evolutionary tape: biomimetic reverse engineering of gene networks
D Marbach, C Mattiussi, D Floreano
Annals of the New York Academy of Sciences 1158 (ARTICLE), 234-245, 2009
452009
Combining multiple results of a reverse engineering algorithm: Application to the DREAM five gene network challenge
D Marbach, C Mattiussi, D Floreano
Annals of the New York Academy of Sciences 1158 (ARTICLE), 102-113, 2009
372009
Bio-mimetic evolutionary reverse engineering of genetic regulatory networks
D Marbach, C Mattiussi, D Floreano
European Conference on Evolutionary Computation, Machine Learning and Data …, 2007
202007
The age of analog networks
C Mattiussi, D Marbach, P Dürr, D Floreano
AI Magazine 29 (3), 63-63, 2008
192008
Genome-wide association between transcription factor expression and chromatin accessibility reveals regulators of chromatin accessibility
D Lamparter, D Marbach, R Rueedi, S Bergmann, Z Kutalik
PLoS computational biology 13 (1), e1005311, 2017
122017
Beyond graphs: A new synthesis
C Mattiussi, P Dürr, D Marbach, D Floreano
Journal of Computational Science 2 (2), 165-177, 2011
122011
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