A structural perspective on protein–protein interactions RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali Current opinion in structural biology 14 (3), 313-324, 2004 | 298 | 2004 |
A soybean cyst nematode resistance gene points to a new mechanism of plant resistance to pathogens S Liu, PK Kandoth, SD Warren, G Yeckel, R Heinz, J Alden, C Yang, ... Nature 492 (7428), 256-260, 2012 | 290 | 2012 |
Integrating diverse data for structure determination of macromolecular assemblies F Alber, F Förster, D Korkin, M Topf, A Sali Annu. Rev. Biochem. 77, 443-477, 2008 | 234 | 2008 |
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism R Corominas, X Yang, GN Lin, S Kang, Y Shen, L Ghamsari, M Broly, ... Nature communications 5 (1), 1-12, 2014 | 131 | 2014 |
Structural genomics of SARS-CoV-2 indicates evolutionary conserved functional regions of viral proteins S Srinivasan, H Cui, Z Gao, M Liu, S Lu, W Mkandawire, O Narykov, ... Viruses 12 (4), 360, 2020 | 121 | 2020 |
Dual roles for the variable domain in protein trafficking and host‐specific recognition of Heterodera glycines CLE effector proteins J Wang, C Lee, A Replogle, S Joshi, D Korkin, R Hussey, TJ Baum, ... New Phytologist 187 (4), 1003-1017, 2010 | 111 | 2010 |
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 93 | 2013 |
Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning N Zhao, JG Han, CR Shyu, D Korkin PLoS Comput Biol 10 (5), e1003592, 2014 | 72 | 2014 |
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 66* | 2019 |
A fast multiple longest common subsequence (MLCS) algorithm Q Wang, D Korkin, Y Shang IEEE Transactions on Knowledge and Data Engineering 23 (3), 321-334, 2010 | 58 | 2010 |
Localization of protein‐binding sites within families of proteins D Korkin, FP Davis, A Sali Protein Science 14 (9), 2350-2360, 2005 | 57 | 2005 |
Structural modeling of protein interactions by analogy: application to PSD-95 D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, ... PLoS Comput Biol 2 (11), e153, 2006 | 52 | 2006 |
Long identical multispecies elements in plant and animal genomes J Reneker, E Lyons, GC Conant, JC Pires, M Freeling, CR Shyu, D Korkin Proceedings of the National Academy of Sciences 109 (19), E1183-E1191, 2012 | 47 | 2012 |
Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break CM Anderson, D Korkin, DL Smith, S Makovets, JJ Seidel, A Sali, ... Genes & development 22 (7), 854-859, 2008 | 46 | 2008 |
What is a structural representation L Goldfarb, D Gay, O Golubitsky, D Korkin Techn. Report TR00 137, 2004 | 42 | 2004 |
Evidence of positive selection in mitochondrial complexes I and V of the African elephant TM Finch, N Zhao, D Korkin, KH Frederick, LS Eggert PLoS One 9 (4), e92587, 2014 | 39 | 2014 |
Literature mining of host–pathogen interactions: comparing feature-based supervised learning and language-based approaches T Thieu, S Joshi, S Warren, D Korkin Bioinformatics 28 (6), 867-875, 2012 | 34 | 2012 |
Accelerating large-scale protein structure alignments with graphics processing units B Pang, N Zhao, M Becchi, D Korkin, CR Shyu BMC research notes 5 (1), 116, 2012 | 30 | 2012 |
DOMMINO: a database of macromolecular interactions X Kuang, JG Han, N Zhao, B Pang, CR Shyu, D Korkin Nucleic acids research 40 (D1), D501-D506, 2012 | 26 | 2012 |
The variation game: Cracking complex genetic disorders with NGS and omics data H Cui, A Dhroso, N Johnson, D Korkin Methods 79, 18-31, 2015 | 25 | 2015 |