Ge Tan
Ge Tan
Functional Genomics Center Zürich, ETH Zürich/University of Zürich
Verified email at fgcz.ethz.ch - Homepage
Title
Cited by
Cited by
Year
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ...
Nucleic acids research 42 (D1), D142-D147, 2014
10072014
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2016
8312016
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
8042018
JASPAR 2020: update of the open-access database of transcription factor binding profiles
O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ...
Nucleic acids research 48 (D1), D87-D92, 2020
1472020
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
1182015
TFBSTools: an R/bioconductor package for transcription factor binding site analysis
G Tan, B Lenhard
Bioinformatics 32 (10), 1555-1556, 2016
1132016
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation
N Harmston, E Ing-Simmons, G Tan, M Perry, M Merkenschlager, ...
Nature communications 8 (1), 1-13, 2017
902017
Conserved non-coding elements: developmental gene regulation meets genome organization
D Polychronopoulos, JWD King, AJ Nash, G Tan, B Lenhard
Nucleic acids research 45 (22), 12611-12624, 2017
432017
Structure-based prediction of the effects of a missense variant on protein stability
Y Yang, B Chen, G Tan, M Vihinen, B Shen
Amino Acids 44 (3), 847-855, 2013
352013
Tight junction, mucin, and inflammasome‐related molecules are differentially expressed in eosinophilic, mixed, and neutrophilic experimental asthma in mice
HTT Tan, S Hagner, F Ruchti, U Radzikowska, G Tan, C Altunbulakli, ...
Allergy 74 (2), 294-307, 2019
322019
Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
H Rehrauer, L Opitz, G Tan, L Sieverling, R Schlapbach
BMC bioinformatics 14 (1), 370, 2013
322013
Distribution of ACE2, CD147, CD26 and other SARS‐CoV‐2 associated molecules in tissues and immune cells in health and in asthma, COPD, obesity, hypertension, and COVID‐19 risk …
U Radzikowska, M Ding, G Tan, D Zhakparov, Y Peng, P Wawrzyniak, ...
Allergy, 2020
302020
Induction of human regulatory innate lymphoid cells from group 2 innate lymphoid cells by retinoic acid
H Morita, T Kubo, B Rückert, A Ravindran, MB Soyka, AO Rinaldi, ...
Journal of Allergy and Clinical Immunology 143 (6), 2190-2201. e9, 2019
282019
A full-body transcriptome and proteome resource for the European common carp
I Kolder, SJ Van Der Plas-Duivesteijn, G Tan, GF Wiegertjes, M Forlenza, ...
BMC genomics 17 (1), 701, 2016
262016
Laundry detergents and detergent residue after rinsing directly disrupt tight junction barrier integrity in human bronchial epithelial cells
M Wang, G Tan, A Eljaszewicz, Y Meng, P Wawrzyniak, S Acharya, ...
Journal of Allergy and Clinical Immunology 143 (5), 1892-1903, 2019
202019
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz
Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015
162015
Long fragments achieve lower base quality in Illumina paired-end sequencing
G Tan, L Opitz, R Schlapbach, H Rehrauer
Scientific reports 9 (1), 1-7, 2019
152019
Role of Der p 1–specific B cells in immune tolerance during 2 years of house dust mite–specific immunotherapy
T Boonpiyathad, W van de Veen, O Wirz, M Sokolowska, B Rückert, G Tan, ...
Journal of Allergy and Clinical Immunology 143 (3), 1077-1086. e10, 2019
142019
Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern
B Tang, X Wu, G Tan, SS Chen, Q Jing, B Shen
BMC systems biology 4 (2), 1-13, 2010
82010
Gene expression signatures of circulating human type 1, 2, and 3 innate lymphoid cells
S Li, H Morita, M Sokolowska, G Tan, T Boonpiyathad, L Opitz, K Orimo, ...
Journal of Allergy and Clinical Immunology 143 (6), 2321-2325, 2019
62019
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