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Rosemary McCloskey
Rosemary McCloskey
Verified email at alumni.ubc.ca
Title
Cited by
Cited by
Year
Ancestral reconstruction
JB Joy, RH Liang, RM McCloskey, T Nguyen, AFY Poon
PLoS computational biology 12 (7), e1004763, 2016
1202016
Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes
JK Mann, H Byakwaga, XT Kuang, AQ Le, CJ Brumme, P Mwimanzi, ...
Retrovirology 10 (1), 1-16, 2013
732013
Global origin and transmission of hepatitis C virus NS3 Q80K polymorphism
RM McCloskey, RH Liang, JB Joy, M Krajden, JSG Montaner, ...
Journal of Infectious Diseases, jiu613, 2014
51*2014
The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study
JB Joy, RM McCloskey, T Nguyen, RH Liang, Y Khudyakov, A Olmstead, ...
The Lancet Infectious Diseases 16 (6), 698-702, 2016
482016
Mapping the shapes of phylogenetic trees from human and zoonotic RNA viruses
AFY Poon, LW Walker, H Murray, RM McCloskey, PR Harrigan, RH Liang
PLoS one 8 (11), e78122, 2013
382013
Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing
RH Liang, T Mo, W Dong, GQ Lee, LC Swenson, RM McCloskey, ...
Nucleic acids research 42 (12), e98-e98, 2014
292014
A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation
RM McCloskey, AFY Poon
PLoS computational biology 13 (11), e1005868, 2017
222017
Differential evolution of a CXCR4-using HIV-1 strain in CCR5wt/wt and CCR5∆ 32/∆ 32 hosts revealed by longitudinal deep sequencing and phylogenetic reconstruction
AQ Le, J Taylor, W Dong, R McCloskey, C Woods, R Danroth, K Hayashi, ...
Scientific reports 5 (1), 1-14, 2015
162015
An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data
RM McCloskey, RH Liang, PR Harrigan, ZL Brumme, AFY Poon
Journal of virology 88 (11), 6181-6194, 2014
122014
Reconstructing contact network parameters from viral phylogenies
RM McCloskey, RH Liang, AFY Poon
Virus evolution 2 (2), 2016
112016
Origin and evolution of human immunodeficiency viruses
JB Joy, RH Liang, T Nguyen, RM McCloskey, AFY Poon
Global Virology I-Identifying and Investigating Viral Diseases, 587-611, 2015
72015
Phylogenetically estimated HIV diversification rates reveal prevention of HIV-1 by antiretroviral therapy
J Joy, R Liang, R McCloskey, T Nguyen, C Brumme, G Colley, R Hogg, ...
Journal of the International AIDS Society 18, 2015
32015
Impact of experimental conditions on the utility of" primer ID" tagging for next-generation HIV sequencing
RH Liang, T Mo, W Dong, GQ Lee, LC Swenson, RM McCloskey, ...
Conference on Retroviruses and Opportunistic Infections Poster 0-128, 2013
32013
Phylodynamic insights into HIV epidemic dynamics within Canada
J Joy, R Liang, T Nguyen, R McCloskey, B Brenner, T Lynch, J Gill, ...
JOURNAL OF THE INTERNATIONAL AIDS SOCIETY 20, 100-101, 2017
2017
Phylogenetic estimation of contact network parameters with approximate Bayesian computation
RM McCloskey
University of British Columbia, 2016
2016
Population-level spread of immune-driven mutations in HIV-1 polymerase during the North American epidemic
NN Kinloch, DR Macmillan, AQ Le, LA Cotton, R Mccloskey, ...
JOURNAL OF THE INTERNATIONAL AIDS SOCIETY 18, 2015
2015
Within-host evolution of X4 HIV-1 in a rare transmission pair revealed by phylogenetic reconstruction of deep-sequence data
A Le, J Taylor, W Dong, R McCloskey, C Woods, K Hayashi, MJ Milloy, ...
JOURNAL OF THE INTERNATIONAL AIDS SOCIETY 18, 2015
2015
8th IAS Conference on HIV Pathogenesis, Treatment and Prevention (IAS 2015).
KM Pate, C Pohlmeyer, V Walker-Sperling, J Foote, K Najarro, C Cryer, ...
Wiley, 2015
2015
8th IAS Conference on HIV Pathogenesis, Treatment & Prevention 19 22 July 2015, Vancouver, Canada
KM Pate, C Pohlmeyer, V Walker‐sperling, J Foote, K Najarro, C Cryer, ...
International AIDS Society, 2015
2015
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Articles 1–19