Nima Aghaeepour
Cited by
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Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ...
Nature methods 10 (3), 228-238, 2013
Guidelines for the use of flow cytometry and cell sorting in immunological studies
A Cossarizza, HD Chang, A Radbruch, A Acs, D Adam, S Adam‐Klages, ...
European journal of immunology 49 (10), 1457-1973, 2019
Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs
C Benz, MR Copley, DG Kent, S Wohrer, A Cortes, N Aghaeepour, E Ma, ...
Cell stem cell 10 (3), 273-283, 2012
Rapid cell population identification in flow cytometry data
N Aghaeepour, R Nikolic, HH Hoos, RR Brinkman
Cytometry Part A 79 (1), 6-13, 2011
Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific Reports 6, 20686, 2016
An immune clock of human pregnancy
N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ...
Science Immunology 2 (15), eaan2946, 2017
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'Neill, H Zare, A Jalali, ...
Bioinformatics 28 (7), 1009-1016, 2012
Flow cytometry bioinformatics
K O'Neill, N Aghaeepour, J Špidlen, R Brinkman
PLoS computational biology 9 (12), e1003365, 2013
Thinking Outside the Gate: Single-Cell Assessments in Multiple Dimensions
P Kvistborg, C Gouttefangeas, N Aghaeepour, A Cazaly, ...
Immunity 42 (4), 591-592, 2015
Rchyoptimyx: Cellular hierarchy optimization for flow cytometry
N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ...
Cytometry Part A 81 (12), 1022-1030, 2012
Patient-specific immune states before surgery are strong correlates of surgical recovery
GK Fragiadakis, B Gaudilličre, EA Ganio, N Aghaeepour, M Tingle, ...
The Journal of the American Society of Anesthesiologists 123 (6), 1241-1255, 2015
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes
N Aghaeepour, P Chattopadhyay, M Chikina, T Dhaene, S Van Gassen, ...
Cytometry Part A, 2015
Deletions in the cytoplasmic domain of iRhom1 and iRhom2 promote shedding of the TNF receptor by the protease ADAM17
SK Maney, DR McIlwain, R Polz, AA Pandyra, B Sundaram, D Wolff, ...
Sci. Signal 8, 2015
Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma
H Zare, A Bashashati, R Kridel, N Aghaeepour, G Haffari, JM Connors, ...
American journal of clinical pathology 137 (1), 75-85, 2012
Implementing Mass Cytometry at the Bedside to Study the Immunological Basis of Human Diseases: Distinctive Immune Features in Patients with a History of Term or Preterm Birth
B Gaudilličre, EA Ganio, M Tingle, HL Lancero, GK Fragiadakis, QJ Baca, ...
Cytometry Part A 87 (9), 817-829, 2015
Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse
Z Good, J Sarno, A Jager, N Samusik, N Aghaeepour, EF Simonds, ...
Nature medicine 24 (4), 474, 2018
Commonly occurring cell subsets in high-grade serous ovarian tumors identified by single-cell mass cytometry
VD Gonzalez, N Samusik, TJ Chen, ES Savig, N Aghaeepour, DA Quigley, ...
Cell reports 22 (7), 1875-1888, 2018
Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data
K O’Neill, A Jalali, N Aghaeepour, H Hoos, RR Brinkman
Bioinformatics 30 (9), 1329-1330, 2014
Multiomics Modeling of the Immunome, Transcriptome, Microbiome, Proteome, and Metabolome Adaptations During Human Pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics, 2018
Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy
GK Fragiadakis, QJ Baca, PF Gherardini, EA Ganio, DK Gaudilliere, ...
The Journal of Immunology 197 (11), 4482-4492, 2016
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