|Reagent and laboratory contamination can critically impact sequence-based microbiome analyses|
SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ...
BMC biology 12 (1), 1-12, 2014
|Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients|
MJ Cox, M Allgaier, B Taylor, MS Baek, YJ Huang, RA Daly, U Karaoz, ...
PloS one 5 (6), e11044, 2010
|The role of bacteria in the pathogenesis and progression of idiopathic pulmonary fibrosis|
PL Molyneaux, MJ Cox, SAG Willis-Owen, P Mallia, KE Russell, ...
American journal of respiratory and critical care medicine 190 (8), 906-913, 2014
|Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease|
PL Molyneaux, P Mallia, MJ Cox, J Footitt, SAG Willis-Owen, D Homola, ...
American journal of respiratory and critical care medicine 188 (10), 1224-1231, 2013
|Co-infections: potentially lethal and unexplored in COVID-19|
MJ Cox, N Loman, D Bogaert, J O'Grady
The Lancet Microbe 1 (1), e11, 2020
|A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations|
YJ Huang, E Kim, MJ Cox, EL Brodie, R Brown, JP Wiener-Kronish, ...
OMICS A Journal of Integrative Biology 14 (1), 9-59, 2010
|Man's best friend? The effect of pet ownership on house dust microbial communities|
KE Fujimura, CC Johnson, DR Ownby, MJ Cox, EL Brodie, SL Havstad, ...
Journal of Allergy and Clinical Immunology 126 (2), 410-412. e3, 2010
|Isolation of viruses responsible for the demise of an Emiliania huxleyi bloom in the English Channel|
WH Wilson, GA Tarran, D Schroeder, M Cox, J Oke, G Malin
Journal of the Marine Biological Association of the United Kingdom 82 (3 …, 2002
|Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing|
K Sim, MJ Cox, H Wopereis, R Martin, J Knol, MS Li, WOCM Cookson, ...
PloS one 7 (3), e32543, 2012
|Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism|
JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell
The ISME journal 1 (6), 480-491, 2007
|Sequencing the human microbiome in health and disease|
MJ Cox, WOCM Cookson, MF Moffatt
Human molecular genetics 22 (R1), R88-R94, 2013
|Dysbiosis anticipating necrotizing enterocolitis in very premature infants|
K Sim, AG Shaw, P Randell, MJ Cox, ZE McClure, MS Li, M Haddad, ...
Clinical infectious diseases 60 (3), 389-397, 2015
|Bacterial microbiota of the upper respiratory tract and childhood asthma|
M Depner, MJ Ege, MJ Cox, S Dwyer, AW Walker, LT Birzele, J Genuneit, ...
Journal of Allergy and Clinical Immunology 139 (3), 826-834. e13, 2017
|Respiratory disease following viral lung infection alters the murine gut microbiota|
HT Groves, L Cuthbertson, P James, MF Moffatt, MJ Cox, JS Tregoning
Frontiers in immunology 9, 182, 2018
|Host–microbial interactions in idiopathic pulmonary fibrosis|
PL Molyneaux, SAG Willis-Owen, MJ Cox, P James, S Cowman, ...
American journal of respiratory and critical care medicine 195 (12), 1640-1650, 2017
|Airway microbiota in severe asthma and relationship to asthma severity and phenotypes|
Q Zhang, M Cox, Z Liang, F Brinkmann, PA Cardenas, R Duff, P Bhavsar, ...
PloS one 11 (4), e0152724, 2016
|Changes in the respiratory microbiome during acute exacerbations of idiopathic pulmonary fibrosis|
PL Molyneaux, MJ Cox, AU Wells, HC Kim, W Ji, WOC Cookson, ...
Respiratory research 18 (1), 1-6, 2017
|Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome|
MJ Cox, YJ Huang, KE Fujimura, JT Liu, M McKean, HA Boushey, ...
PloS one 5 (1), e8745, 2010
|Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza|
J Dunning, S Blankley, L Hoang, M Cox, C Graham, P James, C Bloom, ...
Nature Immunology 19, 625-635, 2018
|Upper airways microbiota in antibiotic-naive wheezing and healthy infants from the tropics of rural Ecuador|
PA Cardenas, PJ Cooper, MJ Cox, M Chico, C Arias, MF Moffatt, ...
Public Library of Science 7 (10), e46803, 2012