| CHARMM‐GUI: A web‐based graphical user interface for CHARMM S Jo, T Kim, VG Iyer, W Im Journal of computational chemistry 29 (11), 1859-1865, 2008 | 6034 | 2008 |
| CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field J Lee, X Cheng, JM Swails, MS Yeom, PK Eastman, JA Lemkul, S Wei, ... Journal of chemical theory and computation 12 (1), 405-413, 2016 | 2836 | 2016 |
| CHARMM‐GUI Membrane Builder toward realistic biological membrane simulations EL Wu, X Cheng, S Jo, H Rui, KC Song, EM Dávila‐Contreras, Y Qi, J Lee, ... Journal of computational chemistry 35 (27), 1997-2004, 2014 | 1925 | 2014 |
| CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranes S Jo, JB Lim, JB Klauda, W Im Biophysical journal 97 (1), 50-58, 2009 | 1476 | 2009 |
| Automated builder and database of protein/membrane complexes for molecular dynamics simulations S Jo, T Kim, W Im PloS one 2 (9), e880, 2007 | 1040 | 2007 |
| CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans J Lee, DS Patel, J Ståhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ... Journal of chemical theory and computation 15 (1), 775-786, 2018 | 386 | 2018 |
| CHARMM-GUI Martini maker for coarse-grained simulations with the Martini force field Y Qi, HI Ingólfsson, X Cheng, J Lee, SJ Marrink, W Im Journal of chemical theory and computation 11 (9), 4486-4494, 2015 | 382 | 2015 |
| CHARMM‐GUI ligand reader and modeler for CHARMM force field generation of small molecules S Kim, J Lee, S Jo, CL Brooks III, HS Lee, W Im Journal of computational chemistry 38 (21), 1879-1886, 2017 | 359 | 2017 |
| CHARMM‐GUI 10 years for biomolecular modeling and simulation S Jo, X Cheng, J Lee, S Kim, SJ Park, DS Patel, AH Beaven, KI Lee, H Rui, ... Journal of computational chemistry 38 (15), 1114-1124, 2017 | 258 | 2017 |
| PBEQ-Solver for online visualization of electrostatic potential of biomolecules S Jo, M Vargyas, J Vasko-Szedlar, B Roux, W Im Nucleic acids research 36 (suppl_2), W270-W275, 2008 | 254 | 2008 |
| CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im Glycobiology 29 (4), 320-331, 2019 | 238 | 2019 |
| CHARMM-GUI PDB Manipulator for Advanced Modeling and Simulations of Proteins Containing Nonstandard Residues S Jo, X Cheng, SM Islam, L Huang, H Rui, A Zhu, HS Lee, Y Qi, W Han, ... Advances in protein chemistry and structural biology 96, 235-265, 2014 | 238 | 2014 |
| CHARMM-GUI supports the Amber force fields J Lee, M Hitzenberger, M Rieger, NR Kern, M Zacharias, W Im The Journal of Chemical Physics 153 (3), 035103, 2020 | 186 | 2020 |
| Glycan Reader: automated sugar identification and simulation preparation for carbohydrates and glycoproteins S Jo, KC Song, H Desaire, AD MacKerell Jr, W Im Journal of computational chemistry 32 (14), 3135-3141, 2011 | 179 | 2011 |
| CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides PC Hsu, BMH Bruininks, D Jefferies, P Cesar Telles de Souza, J Lee, ... Journal of Computational Chemistry 38 (27), 2354-2363, 2017 | 161 | 2017 |
| CHARMM-GUI Micelle Builder for Pure/Mixed Micelle and Protein/Micelle Complex Systems X Cheng, S Jo, HS Lee, JB Klauda, W Im Journal of chemical information and modeling 53 (8), 2171–2180, 2013 | 102 | 2013 |
| Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank SJ Park, J Lee, DS Patel, H Ma, HS Lee, S Jo, W Im Bioinformatics 33 (19), 3051-3057, 2017 | 99 | 2017 |
| CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model Y Qi, X Cheng, J Lee, JV Vermaas, TV Pogorelov, E Tajkhorshid, S Park, ... Biophysical Journal 109 (10), 2012-2022, 2015 | 98 | 2015 |
| CHARMM-GUI Ligand Binder for Absolute Binding Free Energy Calculations and Its Application S Jo, W Jiang, HS Lee, B Roux, W Im Journal of Chemical Information and Modeling 53 (1), 267–277, 2013 | 82 | 2013 |
| CHARMM-GUI Polymer Builder for Modeling and Simulation of Synthetic Polymers YK Choi, SJ Park, S Park, S Kim, NR Kern, J Lee, W Im Journal of chemical theory and computation 17 (4), 2431-2443, 2021 | 73 | 2021 |
