Fernando Izquierdo-Carrasco
Fernando Izquierdo-Carrasco
Amazon Web Services
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Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
13882014
Metagenomic species profiling using universal phylogenetic marker genes
S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ...
Nature methods 10 (12), 1196, 2013
3072013
Nanopore DNA sequencing and genome assembly on the International Space Station
SL Castro-Wallace, CY Chiu, KK John, SE Stahl, KH Rubins, ...
Scientific reports 7 (1), 1-12, 2017
1312017
RAxML-Light: a tool for computing terabyte phylogenies
A Stamatakis, AJ Aberer, C Goll, SA Smith, SA Berger, ...
Bioinformatics 28 (15), 2064-2066, 2012
1222012
The phylogenetic likelihood library
T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ...
Systematic biology 64 (2), 356-362, 2015
652015
Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees
F Izquierdo-Carrasco, SA Smith, A Stamatakis
BMC bioinformatics 12 (1), 470, 2011
602011
What's in my pot? Real-time species identification on the MinION
S Juul, F Izquierdo, A Hurst, X Dai, A Wright, E Kulesha, R Pettett, ...
bioRxiv, 030742, 2015
492015
PUmPER: phylogenies updated perpetually
F Izquierdo-Carrasco, J Cazes, SA Smith, A Stamatakis
Bioinformatics 30 (10), 1476-1477, 2014
142014
A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library
F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ...
2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013
132013
Boosting the performance of bayesian divergence time estimation with the phylogenetic likelihood library
D Darriba, A Aberer, T Flouri, TA Heath, F Izquierdo-Carrasco, ...
2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013
132013
What’s in my pot? Real-time species identification on the MinION. bioRxiv
S Juul, F Izquierdo, A Hurst, X Dai, A Wright, E Kulesha, R Pettett, ...
bioRxiv, 2015
92015
Computing the phylogenetic likelihood function out-of-core
F Izquierdo-Carrasco, A Stamatakis
2011 IEEE International Symposium on Parallel and Distributed Processing …, 2011
72011
Trading memory for running time in phylogenetic likelihood computations
F Izquierdo-Carrasco, J Gagneur, A Stamatakis
Heidelberg Institute for Theoretical Studies, 2011
62011
P1. 32 Hand-held rapid whole genome nanopore sequencing to predict neisseria gonorrhoeae antibiotic susceptibility: steps towards clinic based tailored antimicrobial therapy
LT Phillips, A Witney, F Izquierdo-Carrasco, S Mayes, A Wright, K Laing, ...
Sex Transm Infect 93 (Suppl 2), A56-A56, 2017
52017
Result verification, code verification and computation of support values in phylogenetics
A Stamatakis, F Izquierdo-Carrasco
Briefings in bioinformatics 12 (3), 270-279, 2011
52011
Trading running time for memory in phylogenetic likelihood computations.
F Izquierdo-Carrasco, J Gagneur, A Stamatakis
Bioinformatics, 86-95, 2012
42012
Heuristic algorithms for the protein model assignment problem
J Hauser, K Kobert, F Izquierdo-Carrasco, K Meusemann, B Misof, ...
International Symposium on Bioinformatics Research and Applications, 137-148, 2013
32013
Data from: Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
12014
Inference of huge trees under maximum likelihood
F Izquierdo-Carrasco, A Stamatakis
2012 IEEE 26th International Parallel and Distributed Processing Symposium …, 2012
12012
P665 Rapid sequence typing for antimicrobial resistance surveillance in neisseria gonorrhoeae using whole genome sequencing
L Phillips, A Witney, F Izquierdo-Carrasco, L Zhou, S Mayes, K Laing, ...
Sexually Transmitted Infections 95 (Suppl 1), A292-A292, 2019
2019
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