| Genetic aberrations in soft tissue leiomyosarcoma J Yang, X Du, K Chen, A Ylipää, AJF Lazar, J Trent, D Lev, R Pollock, ... Cancer letters 275 (1), 1-8, 2009 | 116 | 2009 |
| Transcriptome sequencing reveals PCAT5 as a novel ERG-regulated long noncoding RNA in prostate cancer A Ylipää, K Kivinummi, A Kohvakka, M Annala, L Latonen, M Scaravilli, ... Cancer research 75 (19), 4026-4031, 2015 | 83 | 2015 |
| MicroRNA expression profile of primary prostate cancer stem cells as a source of biomarkers and therapeutic targets JK Rane, M Scaravilli, A Ylipää, D Pellacani, VM Mann, MS Simms, ... European urology 67 (1), 7-10, 2015 | 79 | 2015 |
| Genomic and molecular characterization of malignant peripheral nerve sheath tumor identifies the IGF1R pathway as a primary target for treatment J Yang, A Ylipää, Y Sun, H Zheng, K Chen, M Nykter, J Trent, N Ratner, ... Clinical cancer research 17 (24), 7563-7573, 2011 | 72 | 2011 |
| Integrative genomic characterization and a genomic staging system for gastrointestinal stromal tumors A Ylipää, KK Hunt, J Yang, AJF Lazar, KE Torres, DC Lev, M Nykter, ... Cancer 117 (2), 380-389, 2011 | 46 | 2011 |
| Myeloid cell expressed proprotein convertase FURIN attenuates inflammation ZM Cordova, A Grönholm, V Kytölä, V Taverniti, S Hämäläinen, ... Oncotarget 7 (34), 54392, 2016 | 38 | 2016 |
| Genomic amplification and high expression of EGFR are key targetable oncogenic events in malignant peripheral nerve sheath tumor X Du, J Yang, A Ylipää, Z Zhu Journal of hematology & oncology 6 (1), 1-12, 2013 | 31 | 2013 |
| Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer M Annala, K Kivinummi, J Tuominen, S Karakurt, K Granberg, L Latonen, ... Oncotarget 6 (8), 6235, 2015 | 30 | 2015 |
| Characterization of aberrant pathways across human cancers A Ylipää, O Yli-Harja, W Zhang, M Nykter BMC systems biology 7 (S1), S1, 2013 | 11 | 2013 |
| Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data JK Rane, A Ylipää, R Adamson, VM Mann, MS Simms, AT Collins, ... British journal of cancer 113 (4), 611-615, 2015 | 9 | 2015 |
| A systems biological approach to identify key transcription factors and their genomic neighborhoods in human sarcomas A Ylipää, O Yli-Harja, W Zhang, M Nykter Chinese journal of cancer 30 (1), 27, 2011 | 8 | 2011 |
| An integrated study of aberrant gene copy number and gene expression in GIST and LMS D Yang, A Ylipää, J Yang, K Hunt, R Pollock, J Trent, O Yli-Harja, ... Technology in cancer research & treatment 9 (2), 171-177, 2010 | 8 | 2010 |
| Cancer research in the era of next-generation sequencing and big data calls for intelligent modeling J Yli-Hietanen, A Ylipää, O Yli-Harja Chinese journal of cancer 34 (3), 1-4, 2015 | 6 | 2015 |
| Cancer systems biology: signal processing for cancer research O Yli-Harja, A Ylipää, M Nykter, W Zhang Chinese journal of cancer 30 (4), 221, 2011 | 4 | 2011 |
| Stochastic simulation tools for cellular signaling: survey, evaluation, and quantitative analysis E Mäkiraatikka, T Manninen, A Saarinen, A Ylipää, H Teppola, K Hituri, ... Proceedings of the 2nd Conference on Foundations of Systems Biology in …, 2007 | 3 | 2007 |
| Sequential Monte Carlo based maximum likelihood estimation for calcium binding reactions T Manninen, A Saarinen, A Ylipää, ML Linne, O Yli-Harja, K Ruohonen Proc. of the 2nd Conference on Foundations of Systems Biology in Engineering …, 2007 | 1 | 2007 |
| Editor's Note: Genomic and Molecular Characterization of Malignant Peripheral Nerve Sheath Tumor Identifies the IGF1R Pathway as a Primary Target for Treatment J Yang, A Ylipää, Y Sun, H Zheng, K Chen, M Nykter, J Trent, N Ratner, ... Clinical Cancer Research 25 (10), 3195-3195, 2019 | | 2019 |
| Myeloid cell expressed proprotein convertase FURIN attenuates inflammation: P406 Z Cordova, A Grönholm, V Kytölä, V Taverniti, S Hämäläinen, W Niininen, ... Scandinavian Journal of Immunology 83 (5), 2016 | | 2016 |
| Transcriptome sequencing reveals PCAT5-new ERG-regulated non-coding transcript in prostate cancer A Ylipää, K Kivinummi, M Annala, A Kohvakka, L Latonen, M Scaravilli, ... Cancer Research 75 (15 Supplement), 148-148, 2015 | | 2015 |
| 165 Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer M Annala, K Kivinummi, J Tuominen, L Latonen, A Ylipää, O Saramäki, ... European Urology Supplements 2 (14), e165, 2015 | | 2015 |
