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Alexandros Stamatakis
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Year
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
A Stamatakis
Bioinformatics 30 (9), 1312-1313, 2014
294762014
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
A Stamatakis
Bioinformatics 22 (21), 2688-2690, 2006
172672006
A rapid bootstrap algorithm for the RAxML web servers
A Stamatakis, P Hoover, J Rougemont
Systematic biology 57 (5), 758-771, 2008
78902008
ARB: a software environment for sequence data
W Ludwig, O Strunk, R Westram, L Richter, H Meier, Yadhukumar, ...
Nucleic acids research 32 (4), 1363-1371, 2004
66992004
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
J Zhang, K Kobert, T Flouri, A Stamatakis
Bioinformatics 30 (5), 614-620, 2014
40222014
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
Bioinformatics 35 (21), 4453-4455, 2019
25252019
A general species delimitation method with applications to phylogenetic placements
J Zhang, P Kapli, P Pavlidis, A Stamatakis
Bioinformatics 29 (22), 2869-2876, 2013
25152013
Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
24902014
Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
18972014
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
A Stamatakis, T Ludwig, H Meier
Bioinformatics 21 (4), 456-463, 2005
16972005
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri
Molecular biology and evolution 37 (1), 291-294, 2020
12092020
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21, 1-35, 2020
9512020
How many bootstrap replicates are necessary?
ND Pattengale, M Alipour, ORP Bininda-Emonds, BME Moret, ...
Journal of Computational Biology 17 (3), 337-354, 2010
8422010
Assessing the root of bilaterian animals with scalable phylogenomic methods
A Hejnol, M Obst, A Stamatakis, M Ott, GW Rouse, GD Edgecombe, ...
Proceedings of the Royal Society B: Biological Sciences 276 (1677), 4261-4270, 2009
8412009
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri
Bioinformatics 33 (11), 1630-1638, 2017
7562017
Selecting optimal partitioning schemes for phylogenomic datasets
R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis
BMC Evolutionary Biology 14 (1), 82, 2014
6942014
Frontiers: The iPlant Collaborative: Cyberinfrastructure for Plant Biology
SA Goff, M Vaughn, S McKay, E Lyons, AE Stapleton, D Gessler, ...
Frontiers in Plant Genetics And Genomics 2, 2011
537*2011
Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood
SA Berger, D Krompass, A Stamatakis
Systematic biology 60 (3), 291, 2011
5112011
Metagenomic species profiling using universal phylogenetic marker genes
S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ...
Nature methods 10 (12), 1196-1199, 2013
4982013
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
4562019
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